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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109113 (58 seq.)
>W1710872700
LMME01000014
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
19141
19225
+
Leu
CAG
[ENA]
¡û
>W1710873563
LMMW01000034
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
200711
200795
+
Leu
CAG
[ENA]
¡û
>W1710873603
LMMX01000023
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
17819
17735
-
Leu
CAG
[ENA]
¡û
>W1710873878
LMND01000008
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
23823
23739
-
Leu
CAG
[ENA]
¡û
>W1710873939
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
61919
62003
+
Leu
CAG
[ENA]
¡û
>W1710874016
LMNG01000015
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
33234
33150
-
Leu
CAG
[ENA]
¡û
>W1710874146
LMNJ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
44536
44620
+
Leu
CAG
[ENA]
¡û
>W1710874268
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
86437
86353
-
Leu
CAG
[ENA]
¡û
>W1710874331
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
39736
39652
-
Leu
CAG
[ENA]
¡û
>W1710874437
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
26574
26490
-
Leu
CAG
[ENA]
¡û
>W1710874575
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
9498
9414
-
Leu
CAG
[ENA]
¡û
>W1711073778
LSIX01000715
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
25495
25411
-
Leu
CAG
[ENA]
¡û
>W131051719
AMXU01000014
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
21337
21253
-
Leu
CAG
[ENA]
¡û
>W131159756
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
4061026
4061110
+
Leu
CAG
[ENA]
¡û
>C171092169
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
2227653
2227569
-
Leu
CAG
-
¡û
>C171115179
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
820941
821025
+
Leu
CAG
-
¡û
>WENV180026561
FTIU01002908
[FTIU] metagenome; soil
5856
5772
-
Leu
CAG
[ENA]
¢þ
>WENV180111470
OAPN01088688
[OAPN] marine metagenome; 2011
324
408
+
Leu
CAG
[ENA]
¢þ
>WENV181380220
OFRD01042651
[OFRD] wastewater metagenome; Exp Tend CN 100WW
109
25
-
Leu
CAG
[ENA]
¢þ
>W08006125
ABIP01000001
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
107063
106982
-
Leu
CAG
[ENA]
¡û
>C08006501
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
4845357
4845441
+
Leu
CAG
[Ensembl]
¡û
>W141277756
JAEV01000005
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
21109
21193
+
Leu
CAG
[ENA]
¡û
>WENV183660645
ORJL010041747
[ORJL] groundwater metagenome; groundwater
271
187
-
Leu
CAG
[ENA]
¢þ
>WENV170577813
FSSH01001534
[FSSH] freshwater metagenome; drinking water
4195
4111
-
Leu
CAG
[ENA]
¢þ
>WENV170682766
LFIK01001126
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
17251
17167
-
Leu
CAG
[ENA]
¢þ
>C181175648
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
5045840
5045924
+
Leu
CAG
-
¡û
>C181180112
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4335429
4335513
+
Leu
CAG
-
¡û
>C181180113
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4335984
4336068
+
Leu
CAG
-
¡û
>C09107431
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5048681
5048765
+
Leu
CAG
[Ensembl]
¡û
>C09107517
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5344579
5344663
+
Leu
CAG
[Ensembl]
¡û
>C09107618
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
4908699
4908783
+
Leu
CAG
[Ensembl]
¡û
>W1911148366
NPEU01000095
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
2472
2556
+
Leu
CAG
[ENA]
¡û
>W1911708582
QOWC01000199
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
642
558
-
Leu
CAG
[ENA]
¡û
>W1810487210
QAYK01000004
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
178382
178298
-
Leu
CAG
[ENA]
¡û
>SRA1015851
SRR023846.227895
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
139
223
+
Leu
CAG
[SRA]
>W1511563389
LABZ01000239
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
5866
5950
+
Leu
CAG
[ENA]
¡û
>W1511563390
LABZ01000239
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
13113
13197
+
Leu
CAG
[ENA]
¡û
>C161004977
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
4731443
4731527
+
Leu
CAG
[Ensembl]
¡û
>W121081136
AKFK01000079
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
179581
179665
+
Leu
CAG
[ENA]
¡û
>W1610516222
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
230133
230049
-
Leu
CAG
[ENA]
¡û
>W1610590595
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12646
12562
-
Leu
CAG
[ENA]
¡û
>W1610590596
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
11004
10920
-
Leu
CAG
[ENA]
¡û
>W1610735046
LMME01000014
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
19141
19225
+
Leu
CAG
[ENA]
¡û
>W1610735909
LMMW01000034
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
200711
200795
+
Leu
CAG
[ENA]
¡û
>W1610735949
LMMX01000023
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
17819
17735
-
Leu
CAG
[ENA]
¡û
>W1610736224
LMND01000008
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
23823
23739
-
Leu
CAG
[ENA]
¡û
>W1610736285
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
61919
62003
+
Leu
CAG
[ENA]
¡û
>W1610736362
LMNG01000015
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
33234
33150
-
Leu
CAG
[ENA]
¡û
>W1610736492
LMNJ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
44536
44620
+
Leu
CAG
[ENA]
¡û
>W1610736614
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
86437
86353
-
Leu
CAG
[ENA]
¡û
>W1610736677
LMNN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
39736
39652
-
Leu
CAG
[ENA]
¡û
>W1610736783
LMNP01000024
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
26574
26490
-
Leu
CAG
[ENA]
¡û
>W1610736921
LMNS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
9498
9414
-
Leu
CAG
[ENA]
¡û
>W1610913083
LSIX01000715
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
25495
25411
-
Leu
CAG
[ENA]
¡û
>W1710501513
FMBM01000003
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
230133
230049
-
Leu
CAG
[ENA]
¡û
>W1710567568
FOSV01000036
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
8315
8231
-
Leu
CAG
[ENA]
¡û
>W1710709875
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12646
12562
-
Leu
CAG
[ENA]
¡û
>W1710709876
LDRN01000251
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
11004
10920
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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