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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109219 (40 seq.)
>C025512
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1122824
1122905
+
Leu
TAG
[Ensembl]
¡û
>WENV180013244
FMSI01059232
[FMSI] soil metagenome; Soil
5160
5243
+
Leu
TAG
[ENA]
¡û
>WENV181411146
OGCI01014356
[OGCI] hot springs metagenome; Hot spring water
1893
1975
+
Leu
TAG
[ENA]
¡û
>WENV181414401
OGCL01000334
[OGCL] hot springs metagenome; Hot spring water
38147
38065
-
Leu
TAG
[ENA]
¡û
>W08011557
ABVJ01000046
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
1685
1604
-
Leu
TAG
[ENA]
¡û
>C08000530
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
638686
638769
+
Leu
TAG
[Ensembl]
¡û
>C181030474
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2224166
2224249
+
Leu
TAG
-
¡û
>C191001226
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
661357
661275
-
Leu
TAG
-
¡û
>C191085242
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
174015
173931
-
Leu
TAG
-
¡û
>C141007955
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
357553
357471
-
Leu
TAG
-
¡û
>C09103586
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
4848645
4848564
-
Leu
TAG
[Ensembl]
¡û
>C201088946
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
2395408
2395323
-
Leu
TAG
-
¡û
>C211195694
CP064923
Cyanobacteriota
Acaryochloris marina S15 [CP064923]
3325921
3325838
-
Leu
TAG
-
¡û
>C211280892
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
350978
351061
+
Leu
TAG
-
¡û
>C231025115
AP026075
Cyanobacteriota
Acaryochloris marina MBIC10699 [AP026075]
3939406
3939489
+
Leu
TAG
-
¡û
>C231123272
CP071717
Cyanobacteriota
Acaryochloris sp. 'Moss Beach' [CP071717]
328846
328763
-
Leu
TAG
-
¡û
>C231396187
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
172641
172558
-
Leu
TAG
-
¡û
>C241188886
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2420485
2420402
-
Leu
TAG
-
¡û
>C241190864
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
2396513
2396430
-
Leu
TAG
-
¡û
>C241192280
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
2399618
2399533
-
Leu
TAG
-
¡û
>C241293641
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
352349
352432
+
Leu
TAG
-
¡û
>C241293701
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2428394
2428309
-
Leu
TAG
-
¡û
>C241293717
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
343477
343560
+
Leu
TAG
-
¡û
>C241316029
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
345325
345408
+
Leu
TAG
-
¡û
>C241316143
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
353951
354034
+
Leu
TAG
-
¡û
>C241316181
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
354413
354496
+
Leu
TAG
-
¡û
>C241316257
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
354412
354495
+
Leu
TAG
-
¡û
>C241316295
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
354412
354495
+
Leu
TAG
-
¡û
>C241316333
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
354412
354495
+
Leu
TAG
-
¡û
>C241316371
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
349592
349675
+
Leu
TAG
-
¡û
>C241316409
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
349591
349674
+
Leu
TAG
-
¡û
>C241316447
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
349593
349676
+
Leu
TAG
-
¡û
>C241316485
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
352753
352836
+
Leu
TAG
-
¡û
>C241316561
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
343477
343560
+
Leu
TAG
-
¡û
>C241316659
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2428394
2428309
-
Leu
TAG
-
¡û
>C241316697
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2428239
2428154
-
Leu
TAG
-
¡û
>C241316799
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
2405312
2405227
-
Leu
TAG
-
¡û
>W1511108016
JJML01000037
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
26739
26656
-
Leu
TAG
[ENA]
¡û
>W11160113
AFEJ01000050
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
36751
36668
-
Leu
TAG
[ENA]
¡û
>C131004308
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
2328217
2328298
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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