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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10948 (18 seq.)
>W1711724857
MTQN01000012
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
971027
970937
-
Ser
GCT
[ENA]
¡û
>WENV180030887
FTJN01354820
[FTJN] metagenome; soil
1679
1587
-
Ser
GCT
[ENA]
¡û
>C191186703
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3281866
3281776
-
Ser
GCT
-
¡û
>W2010309724
CABWLN010000048
Actinomycetota
Nocardioides sp. AX2bis [CABWLN]
138735
138643
-
Ser
GCT
[ENA]
¡û
>W2011579901
SHKR01000013
Actinomycetota
Kribbella soli VKM Ac-2540 [SHKR]
233607
233697
+
Ser
GCT
[ENA]
¡û
>W2011605251
SJKB01000037
Actinomycetota
Kribbella pittospori NRRL B-24813 [SJKB]
21679
21769
+
Ser
GCT
[ENA]
¡û
>W2011605310
SJKD01000001
Actinomycetota
Kribbella sp. YM53 [SJKD]
563806
563896
+
Ser
GCT
[ENA]
¡û
>W2011621944
SLWN01000014
Actinomycetota
Kribbella sp. VKM Ac-2572 [SLWN]
61482
61392
-
Ser
GCT
[ENA]
¡û
>W2011694920
STGK01000016
Actinomycetota
Nocardioides sp. GY 10113 [STGK]
44437
44346
-
Ser
GCT
[ENA]
¡û
>W2011751956
SZPZ01000003
Actinomycetota
Kribbella sp. NEAU-THZ 27 [SZPZ]
115492
115402
-
Ser
GCT
[ENA]
¡û
>W2012017477
VFMM01000001
Actinomycetota
Kribbella jejuensis DSM 17305 [VFMM]
3419039
3419129
+
Ser
GCT
[ENA]
¡û
>W2012132423
VSSA01000002
Actinomycetota
Nocardioides sp. BGMRC 2183 [VSSA]
319560
319650
+
Ser
GCT
[ENA]
¡û
>W2110553130
JAGINT010000002
Actinomycetota
Kribbella aluminosa DSM 18824 [JAGINT]
824860
824950
+
Ser
GCT
[ENA]
¡û
>C211336913
CP075371
Actinomycetota
Nocardioides aquaticus KCTC 9944 [CP075371]
139962
140054
+
Ser
GCT
-
¡û
>C211377518
CP080409
Actinomycetota
Halomonas denitrificans DP1N28-12 [CP080409]
2962965
2963055
+
Ser
GCT
-
¡û
>C241216107
CP109437
Actinomycetota
Kribbella sp. NBC_01484 [CP109437]
2980159
2980069
-
Ser
GCT
-
¡û
>C10107946
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
282673
282763
+
Ser
GCT
[Ensembl]
¡û
>W1710083314
BDJG01000014
Actinomycetota
Nocardioides sp. PD653 [BDJG]
9700
9608
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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