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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10958 (39 seq.)
>W1710876939
LMPR01000011
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
1026
935
-
Ser
GCT
[ENA]
¡û
>W1710877087
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
69881
69972
+
Ser
GCT
[ENA]
¡û
>W1710909399
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
257779
257870
+
Ser
GCT
[ENA]
¡û
>W1711117010
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
1089
998
-
Ser
GCT
[ENA]
¡û
>W1711166818
LVVL01000012
Bacillota
Exiguobacterium undae [LVVL]
266061
266152
+
Ser
GCT
[ENA]
¡û
>W131241541
BARY01000002
Bacillota
Exiguobacterium sp. OS-77 [BARY]
260854
260945
+
Ser
GCT
[ENA]
¡û
>W1711603252
MOLV01000005
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
893
802
-
Ser
GCT
[ENA]
¡û
>W1711632654
MPSZ01000004
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
221408
221499
+
Ser
GCT
[ENA]
¡û
>W1712017299
NESR01000017
Bacillota
Kurthia gibsonii [NESR]
888
797
-
Ser
GCT
[ENA]
¡û
>C171040571
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
179384
179293
-
Ser
GCT
-
¡û
>C171072149
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
3003192
3003101
-
Ser
GCT
-
¡û
>w003692
AADW02000036
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
13607
13700
+
Ser
GCT
[ENA]
¡û
>C08004821
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2790151
2790063
-
Ser
GCT
[Ensembl]
¡û
>WENV170023206
BCQK01157307
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
147
238
+
Ser
GCT
[ENA]
¢þ
>W141484793
JFYW01000010
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
241724
241815
+
Ser
GCT
[ENA]
¡û
>W141563045
JHZS01000001
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
256040
256131
+
Ser
GCT
[ENA]
¡û
>W141563168
JHZU01000004
Bacillota
Exiguobacterium undae 190-11 [JHZU]
267803
267894
+
Ser
GCT
[ENA]
¡û
>W141563226
JHZV01000003
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
284980
285071
+
Ser
GCT
[ENA]
¡û
>W141701521
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1155106
1155015
-
Ser
GCT
[ENA]
¡û
>W141730960
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2478476
2478385
-
Ser
GCT
[ENA]
¡û
>W141731030
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1311945
1311854
-
Ser
GCT
[ENA]
¡û
>C141009958
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
2885574
2885483
-
Ser
GCT
[Ensembl]
¡û
>W1911770671
QXJB01000003
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
272480
272571
+
Ser
GCT
[ENA]
¡û
>W1810760535
QPKF01000002
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
975
884
-
Ser
GCT
[ENA]
¡û
>W1810760993
QPKS01000013
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
88143
88234
+
Ser
GCT
[ENA]
¡û
>W1511403793
JTLL01000008
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
151882
151973
+
Ser
GCT
[ENA]
¡û
>W1511686097
LFQN01000039
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
7700
7791
+
Ser
GCT
[ENA]
¡û
>W1511699974
LGIW01000012
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
260752
260843
+
Ser
GCT
[ENA]
¡û
>C131001834
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
2579957
2579866
-
Ser
GCT
[Ensembl]
¡û
>W1610589611
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
1084
993
-
Ser
GCT
[ENA]
¡û
>W1610589688
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
17667
17758
+
Ser
GCT
[ENA]
¡û
>W1610739285
LMPR01000011
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
1026
935
-
Ser
GCT
[ENA]
¡û
>W1610739433
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
69881
69972
+
Ser
GCT
[ENA]
¡û
>W1610767758
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
257779
257870
+
Ser
GCT
[ENA]
¡û
>W1610928369
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
1089
998
-
Ser
GCT
[ENA]
¡û
>W1610977358
LVVL01000012
Bacillota
Exiguobacterium undae [LVVL]
266061
266152
+
Ser
GCT
[ENA]
¡û
>W1710511234
FMYN01000004
Bacillota
Exiguobacterium enclense [FMYN]
257779
257870
+
Ser
GCT
[ENA]
¡û
>W1710708891
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
1084
993
-
Ser
GCT
[ENA]
¡û
>W1710708968
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
17667
17758
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK