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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10977 (60 seq.)
>W1710935298
LOKG01000001
Gammaproteobacteria
Xanthomonas campestris pv. vitiswoodrowii [LOKG]
241349
241441
+
Ser
GCT
[ENA]
¡û
>C171007707
CP011160
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 1559 [CP011160]
2262784
2262692
-
Ser
GCT
-
¡û
>C171007760
CP011163
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 1609 [CP011163]
3019346
3019254
-
Ser
GCT
-
¡û
>C171015326
CP012002
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii 1566 [CP012002]
3812598
3812690
+
Ser
GCT
-
¡û
>C171083062
CP018756
Gammaproteobacteria
Stenotrophomonas maltophilia AA1 [CP018756]
1267039
1267131
+
Ser
GCT
-
¡û
>W141039852
ALYK02000296
Gammaproteobacteria
Stenotrophomonas maltophilia S028 [ALYK]
6980
6888
-
Ser
GCT
[ENA]
¡û
>W141079900
ATMC01000034
Gammaproteobacteria
Xanthomonas cassavae CFBP 4642 [ATMC]
110936
111028
+
Ser
GCT
[ENA]
¡û
>WENV183730805
PJTS01000883
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
10736
10644
-
Ser
GCT
[ENA]
¢þ
>WENV183730982
PJTS01003123
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2392
2300
-
Ser
GCT
[ENA]
¢þ
>WENV183739279
PJUE01005848
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
771
679
-
Ser
GCT
[ENA]
¢þ
>WENV183740903
PJUF01016686
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
754
662
-
Ser
GCT
[ENA]
¢þ
>C181048271
CP020985
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6992 [CP020985]
2573051
2573143
+
Ser
GCT
-
¡û
>C181048327
CP020987
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6994R [CP020987]
4555302
4555394
+
Ser
GCT
-
¡û
>C181048404
CP020989
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6996R [CP020989]
1329747
1329655
-
Ser
GCT
-
¡û
>C181048491
CP020998
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6165 [CP020998]
4495808
4495716
-
Ser
GCT
-
¡û
>C181048556
CP021001
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6166 [CP021001]
2307157
2307065
-
Ser
GCT
-
¡û
>C181048617
CP021006
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6975 [CP021006]
423119
423027
-
Ser
GCT
-
¡û
>C181048846
CP021018
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6167 [CP021018]
4912498
4912406
-
Ser
GCT
-
¡û
>C181061161
CP022263
Gammaproteobacteria
Xanthomonas citri pv. vignicola CFBP7111 [CP022263]
3455981
3455889
-
Ser
GCT
-
¡û
>C181061188
CP022267
Gammaproteobacteria
Xanthomonas citri pv. vignicola CFBP7112 [CP022267]
2057999
2058091
+
Ser
GCT
-
¡û
>C181061261
CP022270
Gammaproteobacteria
Xanthomonas citri pv. vignicola CFBP7113 [CP022270]
3028847
3028755
-
Ser
GCT
-
¡û
>C191008730
CP011250
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 1561 [CP011250]
2275153
2275245
+
Ser
GCT
-
¡û
>C191009071
CP012053
Gammaproteobacteria
Xanthomonas citri pv. fuscans ISO118C1 [CP012053]
3437178
3437086
-
Ser
GCT
-
¡û
>C191009124
CP012055
Gammaproteobacteria
Xanthomonas citri pv. fuscans ISO12C3 [CP012055]
3438474
3438382
-
Ser
GCT
-
¡û
>W1910004532
AVET02000001
Gammaproteobacteria
Xanthomonas citri pv. fuscans CFBP 6996 [AVET]
2050042
2050134
+
Ser
GCT
[ENA]
¡û
>C141012209
FO681494
Gammaproteobacteria
Xanthomonas citri pv. fuscans 4834-R [FO681494]
3195842
3195750
-
Ser
GCT
[Ensembl]
¡û
>W1910597619
LAUH01000085
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 535 [LAUH]
27750
27842
+
Ser
GCT
[ENA]
¡û
>W1910597699
LAUI01000254
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 763 [LAUI]
2020
1928
-
Ser
GCT
[ENA]
¡û
>W1910597762
LAUJ01000260
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 867 [LAUJ]
2020
1928
-
Ser
GCT
[ENA]
¡û
>W1910692903
MDEC01000008
Gammaproteobacteria
Xanthomonas codiaei CFBP4690 [MDEC]
83526
83618
+
Ser
GCT
[ENA]
¡û
>W1910692938
MDED01000001
Gammaproteobacteria
Xanthomonas cucurbitae CFBP2542 [MDED]
37846
37754
-
Ser
GCT
[ENA]
¡û
>W1910693178
MDEH01000011
Gammaproteobacteria
Xanthomonas melonis CFBP4644 [MDEH]
99012
99104
+
Ser
GCT
[ENA]
¡û
>W1910694321
MDSK01000009
Gammaproteobacteria
Xanthomonas arboricola pv. guizotiae CFBP 7408 [MDSK]
112070
112162
+
Ser
GCT
[ENA]
¡û
>W1910694356
MDSL01000009
Gammaproteobacteria
Xanthomonas arboricola pv. guizotiae CFBP 7409 [MDSL]
93253
93345
+
Ser
GCT
[ENA]
¡û
>W1911498693
OCYR01000040
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP6166 [OCYR]
85492
85584
+
Ser
GCT
[ENA]
¡û
>W1911498910
OCYV01000025
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP7767 [OCYV]
39291
39199
-
Ser
GCT
[ENA]
¡û
>W1911498951
OCYW01000021
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP6960 [OCYW]
85492
85584
+
Ser
GCT
[ENA]
¡û
>W1911499069
OCYY01000065
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP7766 [OCYY]
85492
85584
+
Ser
GCT
[ENA]
¡û
>W1911499135
OCYZ01000047
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP6992 [OCYZ]
97160
97068
-
Ser
GCT
[ENA]
¡û
>W1911499342
OCZG01000055
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP1815 [OCZG]
85492
85584
+
Ser
GCT
[ENA]
¡û
>W1810084508
PESH01000011
Gammaproteobacteria
Xanthomonas citri pv. anacardii TAQ13 [PESH]
85245
85337
+
Ser
GCT
[ENA]
¡û
>W1810084569
PESI01000015
Gammaproteobacteria
Xanthomonas citri pv. anacardii IBSBF2579 [PESI]
39258
39166
-
Ser
GCT
[ENA]
¡û
>W1810788552
QREM01000009
Gammaproteobacteria
Xanthomonas arboricola NL_P126 [QREM]
411687
411595
-
Ser
GCT
[ENA]
¡û
>W10103037
ACPX01000202
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 11122 [ACPX]
39559
39467
-
Ser
GCT
[ENA]
¡û
>W10103072
ACPY01000184
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 10535 [ACPY]
1966
1874
-
Ser
GCT
[ENA]
¡û
>W11103193
ACPX01000202
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 11122 [ACPX]
39559
39467
-
Ser
GCT
[ENA]
¡û
>W11103228
ACPY01000184
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 10535 [ACPY]
1966
1874
-
Ser
GCT
[ENA]
¡û
>W1511355494
JRRE02000047
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 670 [JRRE]
39454
39362
-
Ser
GCT
[ENA]
¡û
>W1511361743
JSBR02000087
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1654 [JSBR]
34495
34587
+
Ser
GCT
[ENA]
¡û
>W1511366125
JSEW02000071
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1402 [JSEW]
39412
39320
-
Ser
GCT
[ENA]
¡û
>W1511366167
JSEX02000042
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 3660 [JSEX]
39344
39252
-
Ser
GCT
[ENA]
¡û
>W1511402912
JTKK02000062
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 381 [JTKK]
39454
39362
-
Ser
GCT
[ENA]
¡û
>W1511503583
JXHS03000033
Gammaproteobacteria
Xanthomonas citri subsp. fuscans X621 [JXHS]
39454
39362
-
Ser
GCT
[ENA]
¡û
>W1511506138
JXLW02000070
Gammaproteobacteria
Xanthomonas citri subsp. fuscans XCP631 [JXLW]
34475
34567
+
Ser
GCT
[ENA]
¡û
>W1610520787
JFAQ01000102
Gammaproteobacteria
Xanthomonas axonopodis [JFAQ]
17933
17841
-
Ser
GCT
[ENA]
¡û
>W1610527429
JPYF01000040
Gammaproteobacteria
Xanthomonas citri subsp. fuscans [JPYF]
27077
27169
+
Ser
GCT
[ENA]
¡û
>W1610527521
JPYH01000024
Gammaproteobacteria
Xanthomonas citri [JPYH]
93113
93205
+
Ser
GCT
[ENA]
¡û
>W1710616265
JFAQ01000102
Gammaproteobacteria
Xanthomonas axonopodis [JFAQ]
17933
17841
-
Ser
GCT
[ENA]
¡û
>W1710628932
JPYF01000040
Gammaproteobacteria
Xanthomonas citri subsp. fuscans [JPYF]
27077
27169
+
Ser
GCT
[ENA]
¡û
>W1710629025
JPYH02000122
Gammaproteobacteria
Xanthomonas citri [JPYH]
93113
93205
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK