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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110240 (66 seq.)
>C171055700
CP017042
Bacillota
Selenomonas sp. oral taxon 920 W5150 [CP017042]
2261659
2261574
-
Leu
GAG
-
¡û
>W131228295
AUFU01000016
Bacillota
Selenomonas artemidis DSM 19719 [AUFU]
55755
55670
-
Leu
GAG
[ENA]
¡û
>WENV180009001
FLSB01266351
[FLSB] metagenome; saliva
680
765
+
Leu
GAG
[ENA]
¢þ
>WENV180009003
FLSB01266351
[FLSB] metagenome; saliva
935
1020
+
Leu
GAG
[ENA]
¢þ
>WENV180009005
FLSB01266351
[FLSB] metagenome; saliva
1190
1275
+
Leu
GAG
[ENA]
¢þ
>WENV180198708
OBAD01004833
[OBAD] human gut metagenome; ENVO:feces
1486
1401
-
Leu
GAG
[ENA]
¢þ
>WENV180231493
OBCN01037384
[OBCN] human gut metagenome; human gut
278
363
+
Leu
GAG
[ENA]
¢þ
>WENV180564877
OCLF01005169
[OCLF] human gut metagenome; human gut
1268
1353
+
Leu
GAG
[ENA]
¢þ
>WENV180709309
ODFJ01048591
[ODFJ] human metagenome; G_DNA_Tongue dorsum
304
219
-
Leu
GAG
[ENA]
¢þ
>WENV180720438
ODGJ01044840
[ODGJ] human metagenome; G_DNA_Tongue dorsum
224
309
+
Leu
GAG
[ENA]
¢þ
>WENV180725102
ODGR01010311
[ODGR] human metagenome; G_DNA_Tongue dorsum
310
225
-
Leu
GAG
[ENA]
¢þ
>WENV180758091
ODHW01006036
[ODHW] human metagenome; G_DNA_Tongue dorsum
2168
2083
-
Leu
GAG
[ENA]
¢þ
>WENV180758093
ODHW01006036
[ODHW] human metagenome; G_DNA_Tongue dorsum
1913
1828
-
Leu
GAG
[ENA]
¢þ
>WENV180769820
ODIG01174799
[ODIG] human metagenome; G_DNA_Tongue dorsum
206
291
+
Leu
GAG
[ENA]
¢þ
>WENV180791171
ODIT01134687
[ODIT] human metagenome; G_DNA_Tongue dorsum
87
2
-
Leu
GAG
[ENA]
¢þ
>WENV180793714
ODIW01053747
[ODIW] human metagenome; G_DNA_Tongue dorsum
87
2
-
Leu
GAG
[ENA]
¢þ
>WENV180813967
ODJO01004230
[ODJO] human metagenome; G_DNA_Supragingival plaque
1446
1531
+
Leu
GAG
[ENA]
¢þ
>WENV180816270
ODJP01007167
[ODJP] human metagenome; G_DNA_Tongue dorsum
3360
3275
-
Leu
GAG
[ENA]
¢þ
>WENV180816272
ODJP01007167
[ODJP] human metagenome; G_DNA_Tongue dorsum
3105
3020
-
Leu
GAG
[ENA]
¢þ
>WENV180823390
ODJW01024467
[ODJW] human metagenome; G_DNA_Supragingival plaque
928
843
-
Leu
GAG
[ENA]
¢þ
>WENV180843883
ODKN01016021
[ODKN] human metagenome; G_DNA_Supragingival plaque
60
145
+
Leu
GAG
[ENA]
¢þ
>WENV180861974
ODLE01022520
[ODLE] human metagenome; G_DNA_Tongue dorsum
1046
961
-
Leu
GAG
[ENA]
¢þ
>WENV180861976
ODLE01022520
[ODLE] human metagenome; G_DNA_Tongue dorsum
791
706
-
Leu
GAG
[ENA]
¢þ
>WENV180880079
ODLZ01007152
[ODLZ] human metagenome; G_DNA_Tongue dorsum
3370
3285
-
Leu
GAG
[ENA]
¢þ
>WENV180880081
ODLZ01007152
[ODLZ] human metagenome; G_DNA_Tongue dorsum
3121
3036
-
Leu
GAG
[ENA]
¢þ
>WENV180883694
ODMC01012529
[ODMC] human metagenome; G_DNA_Tongue dorsum
1596
1511
-
Leu
GAG
[ENA]
¢þ
>WENV180883696
ODMC01012529
[ODMC] human metagenome; G_DNA_Tongue dorsum
1341
1256
-
Leu
GAG
[ENA]
¢þ
>WENV180900997
ODOJ01022776
[ODOJ] human metagenome; G_DNA_Tongue dorsum
528
443
-
Leu
GAG
[ENA]
¢þ
>WENV180900999
ODOJ01022776
[ODOJ] human metagenome; G_DNA_Tongue dorsum
273
188
-
Leu
GAG
[ENA]
¢þ
>WENV180968992
ODUT01169816
[ODUT] human metagenome; G_DNA_Tongue dorsum
194
109
-
Leu
GAG
[ENA]
¢þ
>WENV180991354
ODVN01052377
[ODVN] human metagenome; G_DNA_Tongue dorsum
318
233
-
Leu
GAG
[ENA]
¢þ
>WENV181011513
ODWI01041453
[ODWI] human metagenome; G_DNA_Tongue dorsum
78
163
+
Leu
GAG
[ENA]
¢þ
>WENV181017347
ODWR01053762
[ODWR] human metagenome; G_DNA_Tongue dorsum
211
296
+
Leu
GAG
[ENA]
¢þ
>WENV181033459
ODXN01008312
[ODXN] human metagenome; G_DNA_Tongue dorsum
2322
2237
-
Leu
GAG
[ENA]
¢þ
>WENV181033461
ODXN01008312
[ODXN] human metagenome; G_DNA_Tongue dorsum
2067
1982
-
Leu
GAG
[ENA]
¢þ
>WENV181041878
ODXS01062959
[ODXS] human metagenome; G_DNA_Tongue dorsum
407
492
+
Leu
GAG
[ENA]
¢þ
>WENV181063058
ODYP01000041
[ODYP] human metagenome; G_DNA_Supragingival plaque
119169
119084
-
Leu
GAG
[ENA]
¢þ
>WENV181079697
OEAS01012156
[OEAS] human metagenome; G_DNA_Supragingival plaque
736
821
+
Leu
GAG
[ENA]
¢þ
>WENV181095000
OEBY01002343
[OEBY] human metagenome; G_DNA_Tongue dorsum
1093
1178
+
Leu
GAG
[ENA]
¢þ
>WENV181095002
OEBY01002343
[OEBY] human metagenome; G_DNA_Tongue dorsum
1348
1433
+
Leu
GAG
[ENA]
¢þ
>WENV181095637
OEBY01014421
[OEBY] human metagenome; G_DNA_Tongue dorsum
514
429
-
Leu
GAG
[ENA]
¢þ
>WENV181098154
OECA01100661
[OECA] human metagenome; G_DNA_Tongue dorsum
136
221
+
Leu
GAG
[ENA]
¢þ
>WENV181103714
OECV01001649
[OECV] human metagenome; G_DNA_Throat
4438
4523
+
Leu
GAG
[ENA]
¢þ
>WENV181105885
OEED01022868
[OEED] human metagenome; G_DNA_Tongue dorsum
369
454
+
Leu
GAG
[ENA]
¢þ
>WENV181105887
OEED01022868
[OEED] human metagenome; G_DNA_Tongue dorsum
624
709
+
Leu
GAG
[ENA]
¢þ
>WENV181129667
OEFX01073842
[OEFX] human metagenome; G_DNA_Tongue dorsum
155
70
-
Leu
GAG
[ENA]
¢þ
>WENV181151732
OEHW01114037
[OEHW] human metagenome; G_DNA_Tongue dorsum
98
183
+
Leu
GAG
[ENA]
¢þ
>WENV181157557
OEIG01011171
[OEIG] human metagenome; G_DNA_Hard palate
190
275
+
Leu
GAG
[ENA]
¢þ
>WENV181176789
OEJR01044841
[OEJR] human metagenome; G_DNA_Saliva
310
225
-
Leu
GAG
[ENA]
¢þ
>WENV183027840
OLFV01000440
[OLFV] human gut metagenome; faeces
1507
1592
+
Leu
GAG
[ENA]
¢þ
>WENV183339370
OLWK01045014
[OLWK] human gut metagenome; feces
118
203
+
Leu
GAG
[ENA]
¢þ
>WENV183340645
OLWL01025249
[OLWL] human gut metagenome; feces
439
524
+
Leu
GAG
[ENA]
¢þ
>WENV183360380
OLXI01017164
[OLXI] human gut metagenome; feces
664
749
+
Leu
GAG
[ENA]
¢þ
>WENV183573242
OOCG01007482
[OOCG] human gut metagenome; human gut
1606
1691
+
Leu
GAG
[ENA]
¢þ
>WENV183640959
OQVL01014884
[OQVL] human gut metagenome; human gut
2515
2600
+
Leu
GAG
[ENA]
¢þ
>WENV183643045
OQVO01000851
[OQVO] human gut metagenome; human gut
3827
3742
-
Leu
GAG
[ENA]
¢þ
>WENV183648308
OQVS01011186
[OQVS] human gut metagenome; human gut
580
665
+
Leu
GAG
[ENA]
¢þ
>WENV183762267
PPYE01275314
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
39473
39388
-
Leu
GAG
[ENA]
¢þ
>C151090499
CP012071
Bacillota
Selenomonas sp. oral taxon 478 F0592 [CP012071]
1034284
1034369
+
Leu
GAG
-
¡û
>C151090501
CP012071
Bacillota
Selenomonas sp. oral taxon 478 F0592 [CP012071]
1034538
1034623
+
Leu
GAG
-
¡û
>W11133206
AECV01000033
Bacillota
Selenomonas artemidis F0399 [AECV]
3481
3396
-
Leu
GAG
[ENA]
¡û
>C161069282
CP014239
Bacillota
Selenomonas sp. oral taxon 136 F0591 [CP014239]
1061555
1061470
-
Leu
GAG
[Ensembl]
¡û
>C161069284
CP014239
Bacillota
Selenomonas sp. oral taxon 136 F0591 [CP014239]
1061301
1061216
-
Leu
GAG
[Ensembl]
¡û
>W121111731
ALJR01000041
Bacillota
Selenomonas sp. FOBRC9 [ALJR]
1622
1707
+
Leu
GAG
[ENA]
¡û
>W1710516310
FNCM01000009
Bacillota
Selenomonas ruminantium [FNCM]
1273
1358
+
Leu
GAG
[ENA]
¡û
>W1710564349
FOQK01000030
Bacillota
Selenomonas ruminantium [FOQK]
36197
36112
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK