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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110457 (5 seq.)
>WENV181372187
OFQW01026933
[OFQW] wastewater metagenome; Exp Tend NO 90WW
414
330
-
Asn
GTT
[ENA]
¡û
>WENV181372462
OFQX01000005
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
50891
50807
-
Asn
GTT
[ENA]
¡û
>WENV181375534
OFQZ01000064
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
32821
32737
-
Asn
GTT
[ENA]
¡û
>WENV181380728
OFRE01004812
[OFRE] wastewater metagenome; Exp Tend NO 50WW
228
144
-
Asn
GTT
[ENA]
¡û
>WENV181389442
OFRO01000065
[OFRO] wastewater metagenome; Exp Tend NO 10WW
1163
1247
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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