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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.111196 (105 seq.)
>W1710785345
LJHT01000111
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
53656
53741
+
Tyr
GTA
[ENA]
¡û
>W1710877833
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
550
465
-
Tyr
GTA
[ENA]
¡û
>W1710893450
LNET01000108
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
641
556
-
Tyr
GTA
[ENA]
¡û
>W1711386270
MEFD01000011
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
6936
7021
+
Tyr
GTA
[ENA]
¡û
>W1711394926
MESO01000038
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
461
376
-
Tyr
GTA
[ENA]
¡û
>W1711453676
MIYM01000008
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
217761
217846
+
Tyr
GTA
[ENA]
¡û
>W1711502448
MKSS01000016
Betaproteobacteria
Hydrogenophaga sp. 70-12 [MKSS]
25936
26021
+
Tyr
GTA
[ENA]
¡û
>W131052555
AMZA01001398
Betaproteobacteria
beta proteobacterium FWI2 [AMZA]
366
281
-
Tyr
GTA
[ENA]
¡û
>W131063332
ANKP01000221
Betaproteobacteria
Cupriavidus sp. HMR-1 [ANKP]
24178
24093
-
Tyr
GTA
[ENA]
¡û
>W131214635
ATUI01000035
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
16541
16626
+
Tyr
GTA
[ENA]
¡û
>W131226942
AUET01000010
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
1347
1262
-
Tyr
GTA
[ENA]
¡û
>W131236696
AUMO01000043
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
30029
29944
-
Tyr
GTA
[ENA]
¡û
>C013927
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
3669046
3668961
-
Tyr
GTA
[Ensembl]
¡û
>C018461
AM260479
Betaproteobacteria
Cupriavidus necator H16 [AM260479, AM260480]
3780259
3780174
-
Tyr
GTA
[Ensembl]
¡û
>C018754
CP000352
Betaproteobacteria
Cupriavidus metallidurans CH34 [CP000352]
3612507
3612422
-
Tyr
GTA
[Ensembl]
¡û
>WENV180013716
FMSI01139577
[FMSI] soil metagenome; Soil
449
364
-
Tyr
GTA
[ENA]
¢þ
>WENV180249519
OBEQ010204761
[OBEQ] groundwater metagenome; groundwater
530
445
-
Tyr
GTA
[ENA]
¢þ
>WENV180264013
OBEQ011528668
[OBEQ] groundwater metagenome; groundwater
851
936
+
Tyr
GTA
[ENA]
¢þ
>WENV180295744
OBIZ01284139
[OBIZ] soil metagenome; soil
36
121
+
Tyr
GTA
[ENA]
¢þ
>WENV180351425
OBLQ010055700
[OBLQ] soil metagenome; soil
622
537
-
Tyr
GTA
[ENA]
¢þ
>WENV180355348
OBNH01004037
[OBNH] sediment metagenome; sediment
294
379
+
Tyr
GTA
[ENA]
¢þ
>WENV181164670
OEIR01290665
[OEIR] soil metagenome; soil
100
185
+
Tyr
GTA
[ENA]
¢þ
>WENV181187889
OEOE01001274
[OEOE] activated sludge metagenome; Activated Sludge
1969
2054
+
Tyr
GTA
[ENA]
¢þ
>WENV181223034
OFDC01001333
[OFDC] hot springs metagenome; Water
12942
13027
+
Tyr
GTA
[ENA]
¢þ
>WENV181227260
OFDN01004425
[OFDN] hot springs metagenome; Water
6002
6087
+
Tyr
GTA
[ENA]
¢þ
>WENV181378672
OFRB01047412
[OFRB] wastewater metagenome; Exp Tend CN 0WW
303
218
-
Tyr
GTA
[ENA]
¢þ
>WENV181391934
OFRV01000626
[OFRV] freshwater metagenome; Freshwater Lake
2322
2237
-
Tyr
GTA
[ENA]
¢þ
>C08008204
AM260479
Betaproteobacteria
Cupriavidus necator H16 [AM260479, AM260480]
3780259
3780177
-
Tyr
GTA
[Ensembl]
¡û
>W141214268
AZSN01000356
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
705
790
+
Tyr
GTA
[ENA]
¡û
>W141223630
BADL01000074
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
4921
5006
+
Tyr
GTA
[ENA]
¡û
>W141234432
BAWN01000048
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
459
374
-
Tyr
GTA
[ENA]
¡û
>W141260614
CCAE010000006
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
144990
144905
-
Tyr
GTA
[ENA]
¡û
>W141276702
JADZ01000039
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
923
838
-
Tyr
GTA
[ENA]
¡û
>C08005943
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
4348419
4348337
-
Tyr
GTA
[Ensembl]
¡û
>WENV183674588
ORJL011407129
[ORJL] groundwater metagenome; groundwater
365
280
-
Tyr
GTA
[ENA]
¢þ
>WENV183703689
PDVJ01035491
[PDVJ] alkali sediment metagenome; glacial lake sediment
296
381
+
Tyr
GTA
[ENA]
¢þ
>WENV170019950
BBPE01001759
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
169
84
-
Tyr
GTA
[ENA]
¢þ
>WENV170020088
BBPE01002819
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
412
327
-
Tyr
GTA
[ENA]
¢þ
>WENV170639650
JFJP01005635
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
488
403
-
Tyr
GTA
[ENA]
¢þ
>WENV170639864
JFJP01010519
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10513
10598
+
Tyr
GTA
[ENA]
¢þ
>WENV170651162
JRYF01001643
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1059
1144
+
Tyr
GTA
[ENA]
¢þ
>WENV170658749
JUEG02000045
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
602
517
-
Tyr
GTA
[ENA]
¢þ
>WENV170660782
JXWU01029459
[JXWU] soil metagenome; rice field; organic control Plot
421
336
-
Tyr
GTA
[ENA]
¢þ
>WENV170965671
MTEU01005808
[MTEU] soil metagenome; naturally attenuated soil
109
194
+
Tyr
GTA
[ENA]
¢þ
>W09100047
AAAI03000011
Betaproteobacteria
Cupriavidus metallidurans CH34 [AAAI]
179651
179566
-
Tyr
GTA
[ENA]
¡û
>W09101377
AAEM01000002
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
26881
26966
+
Tyr
GTA
[ENA]
¡û
>W141485146
JFZD01000214
Betaproteobacteria
Cupriavidus metallidurans [JFZD]
413
328
-
Tyr
GTA
[ENA]
¡û
>W141485153
JFZE01000027
Betaproteobacteria
Cupriavidus metallidurans [JFZE]
363
278
-
Tyr
GTA
[ENA]
¡û
>C181064515
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
841804
841889
+
Tyr
GTA
-
¡û
>C181134485
CP026544
Betaproteobacteria
Cupriavidus metallidurans Ni-2 [CP026544]
6228966
6228881
-
Tyr
GTA
-
¡û
>C181176174
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
191092
191177
+
Tyr
GTA
-
¡û
>C191154527
CP037900
Betaproteobacteria
Cupriavidus metallidurans BS1 [CP037900, CP037901]
3625115
3625030
-
Tyr
GTA
-
¡û
>C191164575
CP039287
Betaproteobacteria
Cupriavidus necator H16 [CP039287, CP039288]
3778195
3778110
-
Tyr
GTA
-
¡û
>W141727683
JNFG01000036
Betaproteobacteria
Caballeronia sordidicola [JNFG]
66041
65956
-
Tyr
GTA
[ENA]
¡û
>W1910175613
BJCL01000021
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
63378
63293
-
Tyr
GTA
[ENA]
¡û
>W1910501695
FYAR01000017
Betaproteobacteria
Cupriavidus metallidurans NDB2Meth2 [FYAR]
294958
294873
-
Tyr
GTA
[ENA]
¡û
>W1910699917
MESA01000027
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
112994
113079
+
Tyr
GTA
[ENA]
¡û
>W1910700355
MESK01000112
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
113043
113128
+
Tyr
GTA
[ENA]
¡û
>W1910804556
MTHB01000141
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
431
516
+
Tyr
GTA
[ENA]
¡û
>W1911518404
OFSS01000010
Betaproteobacteria
Cupriavidus taiwanensis [OFSS]
104736
104651
-
Tyr
GTA
[ENA]
¡û
>W1911518728
OFSZ01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFSZ]
26825
26740
-
Tyr
GTA
[ENA]
¡û
>W1911519242
OFTI01000021
Betaproteobacteria
Cupriavidus taiwanensis [OFTI]
20078
19993
-
Tyr
GTA
[ENA]
¡û
>W1911519463
OFTM01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFTM]
129596
129511
-
Tyr
GTA
[ENA]
¡û
>W1911701451
QNUI01000142
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
6919
7004
+
Tyr
GTA
[ENA]
¡û
>W1911768559
QXGR01000016
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
26449
26534
+
Tyr
GTA
[ENA]
¡û
>W1810017361
BGPQ01000111
Betaproteobacteria
Cupriavidus sp. P-10 [BGPQ]
498
413
-
Tyr
GTA
[ENA]
¡û
>W1810194586
PKPC01000041
Betaproteobacteria
Ralstonia insidiosa WCHRI065162 [PKPC]
357
272
-
Tyr
GTA
[ENA]
¡û
>W1810273289
PSNX01000016
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
506
421
-
Tyr
GTA
[ENA]
¡û
>W1810537710
QDFJ01000112
Betaproteobacteria
Cupriavidus metallidurans BS1 [QDFJ]
263
348
+
Tyr
GTA
[ENA]
¡û
>W1810573259
QEKP01000017
Betaproteobacteria
Cupriavidus alkaliphilus CAG-122 [QEKP]
131989
131904
-
Tyr
GTA
[ENA]
¡û
>W1810596776
QGGT01000007
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
416
501
+
Tyr
GTA
[ENA]
¡û
>W1810666678
QJOU01000117
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
412
327
-
Tyr
GTA
[ENA]
¡û
>W1810685784
QKZN01000013
Betaproteobacteria
Cupriavidus alkaliphilus MLR2-44 [QKZN]
575
660
+
Tyr
GTA
[ENA]
¡û
>W1810884639
QUMT01000003
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
708891
708806
-
Tyr
GTA
[ENA]
¡û
>W1810912346
QVLS01000006
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
463
378
-
Tyr
GTA
[ENA]
¡û
>C151002101
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
2185053
2184968
-
Tyr
GTA
[Ensembl]
¡û
>C151002145
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
2221148
2221063
-
Tyr
GTA
[Ensembl]
¡û
>WENV029380
AACY021194085
Marine microbial communities from Global Ocean Sampling (GOS)
729
644
-
Tyr
GTA
[ENA]
>C151081684
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
5762075
5761990
-
Tyr
GTA
[Ensembl]
¡û
>ENV09000437
ABSN01069149
Freshwater sediment metagenome lwFormaldehyde_C1
356
271
-
Tyr
GTA
[ENA]
¡û
>ENV09000470
ABSO01002335
Freshwater sediment metagenome lwFormate_C1
3366
3451
+
Tyr
GTA
[ENA]
¡û
>ENV09001399
ABSR01005039
Freshwater sediment metagenome lwMethylamine_C1
592
677
+
Tyr
GTA
[ENA]
¡û
>W1510015119
BBQN01000225
Betaproteobacteria
Cupriavidus pauculus KF709 [BBQN]
362
277
-
Tyr
GTA
[ENA]
¡û
>W1510021351
BBYR01000033
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
92226
92311
+
Tyr
GTA
[ENA]
¡û
>C11105763
CP002877
Betaproteobacteria
Cupriavidus necator N-1 [CP002877, CP002878]
3594936
3594851
-
Tyr
GTA
[Ensembl]
¡û
>W1510766062
JANU01000004
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
175363
175448
+
Tyr
GTA
[ENA]
¡û
>C11118985
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
3818952
3818867
-
Tyr
GTA
[Ensembl]
¡û
>W1511433166
JUGZ01000042
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
780
695
-
Tyr
GTA
[ENA]
¡û
>W1511449678
JVBI01000178
Betaproteobacteria
Ralstonia solanacearum 58_RSOL [JVBI]
1567
1482
-
Tyr
GTA
[ENA]
¡û
>W1511552109
JZUE01000009
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
252377
252462
+
Tyr
GTA
[ENA]
¡û
>C121001082
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
330419
330504
+
Tyr
GTA
[Ensembl]
¡û
>C161078286
CP014844
Betaproteobacteria
Cupriavidus nantongensis X1 [CP014844, CP014845]
4613906
4613821
-
Tyr
GTA
[Ensembl]
¡û
>W121036326
AHLZ01000001
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
378362
378447
+
Tyr
GTA
[ENA]
¡û
>W121060081
AJFF01000039
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
436
351
-
Tyr
GTA
[ENA]
¡û
>W121070139
AJWL01000134
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
386
301
-
Tyr
GTA
[ENA]
¡û
>W1610070235
BCTC01000015
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
92375
92460
+
Tyr
GTA
[ENA]
¡û
>W1610074334
BCWO01000061
Betaproteobacteria
Cupriavidus oxalaticus NBRC 13593 [BCWO]
249
334
+
Tyr
GTA
[ENA]
¡û
>W1610206822
FCOK02000237
Betaproteobacteria
Caballeronia udeis [FCOK]
426
341
-
Tyr
GTA
[ENA]
¡û
>W1610649151
LJHT01000111
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
53656
53741
+
Tyr
GTA
[ENA]
¡û
>W1610740179
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
550
465
-
Tyr
GTA
[ENA]
¡û
>W1610753716
LNET01000108
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
641
556
-
Tyr
GTA
[ENA]
¡û
>W1710067608
BCTC01000015
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
92375
92460
+
Tyr
GTA
[ENA]
¡û
>W1710071452
BCWO01000061
Betaproteobacteria
Cupriavidus oxalaticus NBRC 13593 [BCWO]
249
334
+
Tyr
GTA
[ENA]
¡û
>W1710207572
FCOK02000237
Betaproteobacteria
Caballeronia udeis [FCOK]
426
341
-
Tyr
GTA
[ENA]
¡û
>W1710544479
FOAV01000010
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
108960
108875
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK