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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.111257 (25 seq.)
>W1711253294
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
2701028
2701112
+
Leu
TAA
[ENA]
¡û
>W1711261734
LYWZ01000022
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
874514
874430
-
Leu
TAA
[ENA]
¡û
>C171096162
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
2701028
2701112
+
Leu
TAA
-
¡û
>WENV181227311
OFDN01005852
[OFDN] hot springs metagenome; Water
5123
5207
+
Leu
TAA
[ENA]
¡û
>WENV170176506
CEOS01085597
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1391
1475
+
Leu
TAA
[ENA]
¡û
>WENV170278738
CERQ01124187
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4175
4259
+
Leu
TAA
[ENA]
¡û
>W1810195687
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1897167
1897083
-
Leu
TAA
[ENA]
¡û
>W2010585579
JABAID010000001
Alphaproteobacteria
Novosphingobium sp. ERN07 [JABAID]
456601
456685
+
Leu
TAA
[ENA]
¡û
>W2010712007
JACHOA010000005
Alphaproteobacteria
Novosphingobium taihuense DSM 17507 [JACHOA]
328519
328603
+
Leu
TAA
[ENA]
¡û
>W2011697876
SUNC01000001
Alphaproteobacteria
Croceicoccus sp. S2-4-2 [SUNC]
1618399
1618483
+
Leu
TAA
[ENA]
¡û
>W2012081383
VLKJ01000003
Alphaproteobacteria
Novosphingobium taihuense CGMCC 1.3432 [VLKJ]
108875
108791
-
Leu
TAA
[ENA]
¡û
>W2110026758
BMIP01000001
Alphaproteobacteria
Croceicoccus mobilis CGMCC 1.15360 [BMIP]
873291
873207
-
Leu
TAA
[ENA]
¡û
>W2110050084
BMZD01000001
Alphaproteobacteria
Novosphingobium arvoryzae KCTC 32422 [BMZD]
228446
228530
+
Leu
TAA
[ENA]
¡û
>W2110372044
JADQDC010000004
Alphaproteobacteria
Novosphingobium jiangmenense 1Y9A [JADQDC]
173869
173785
-
Leu
TAA
[ENA]
¡û
>C211128200
CP060052
Alphaproteobacteria
Croceicoccus marinus OT19 [CP060052]
629391
629307
-
Leu
TAA
-
¡û
>C211177373
CP063445
Alphaproteobacteria
Novosphingobium sp. ES2-1 [CP063445]
3153733
3153817
+
Leu
TAA
-
¡û
>C231273498
CP090370
Alphaproteobacteria
Erythrobacter sp. SDW2 [CP090370]
439507
439423
-
Leu
TAA
-
¡û
>C231566036
CP115446
Alphaproteobacteria
Aurantiacibacter sp. MUD61 [CP115446]
1028151
1028235
+
Leu
TAA
-
¡û
>W1511357008
JRVC01000006
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
124136
124052
-
Leu
TAA
[ENA]
¡û
>W1610077041
BCZF01000016
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
25012
25096
+
Leu
TAA
[ENA]
¡û
>W1610912142
LSIA01000013
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
17528
17612
+
Leu
TAA
[ENA]
¡û
>W1611017831
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
2701028
2701112
+
Leu
TAA
[ENA]
¡û
>W1611023709
LYWZ01000022
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
874514
874430
-
Leu
TAA
[ENA]
¡û
>W1710074730
BCZF01000016
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
25012
25096
+
Leu
TAA
[ENA]
¡û
>W1710606002
FWXL01000007
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
102338
102254
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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