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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.111481 (122 seq.)
>W1710791928
LJOD01000076
Bacteroidota
Chryseobacterium indologenes [LJOD]
117
200
+
Leu
GAG
[ENA]
¡û
>W1710855740
LLYZ01000020
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
77470
77553
+
Leu
GAG
[ENA]
¡û
>W1710857459
LMAH01000004
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
162615
162532
-
Leu
GAG
[ENA]
¡û
>W1710877666
LMQH01000011
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
87544
87629
+
Leu
GAG
[ENA]
¡û
>W1710877891
LMQM01000012
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
469969
469884
-
Leu
GAG
[ENA]
¡û
>W1711071998
LSHB01000037
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
1324
1241
-
Leu
GAG
[ENA]
¡û
>W1711132226
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
208727
208644
-
Leu
GAG
[ENA]
¡û
>W1711314233
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
394113
394196
+
Leu
GAG
[ENA]
¡û
>W1711318350
MAYF01000353
Bacteroidota
Chryseobacterium contaminans [MAYF]
11318
11235
-
Leu
GAG
[ENA]
¡û
>W1711318418
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
217934
218017
+
Leu
GAG
[ENA]
¡û
>W1711503224
MKTK01000007
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
138090
138007
-
Leu
GAG
[ENA]
¡û
>W1711505104
MKVE01000017
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
320688
320771
+
Leu
GAG
[ENA]
¡û
>W1711767798
MVAG01000148
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
556
471
-
Leu
GAG
[ENA]
¡û
>W1711767800
MVAG01000148
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
288
203
-
Leu
GAG
[ENA]
¡û
>W1712082024
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
388535
388620
+
Leu
GAG
[ENA]
¡û
>W131235277
AULL01000011
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
140775
140690
-
Leu
GAG
[ENA]
¡û
>W131237041
AUMU01000007
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
71348
71265
-
Leu
GAG
[ENA]
¡û
>WENV183738476
PJUE01000004
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
158976
158893
-
Leu
GAG
[ENA]
¢þ
>WENV183742039
PJUH01000096
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
21377
21294
-
Leu
GAG
[ENA]
¢þ
>WENV183742693
PJUI01000058
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
20620
20537
-
Leu
GAG
[ENA]
¢þ
>C181061628
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
4123089
4123172
+
Leu
GAG
-
¡û
>C181075464
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
2310890
2310807
-
Leu
GAG
-
¡û
>C191099935
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3345944
3346027
+
Leu
GAG
-
¡û
>C191111355
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
161412
161329
-
Leu
GAG
-
¡û
>C191112432
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
427487
427570
+
Leu
GAG
-
¡û
>C191112938
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3691331
3691248
-
Leu
GAG
-
¡û
>C191115828
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
2418119
2418202
+
Leu
GAG
-
¡û
>C191115998
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
4130065
4130148
+
Leu
GAG
-
¡û
>C191116221
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4379195
4379278
+
Leu
GAG
-
¡û
>C191116382
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2145762
2145845
+
Leu
GAG
-
¡û
>C191116460
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1521364
1521449
+
Leu
GAG
-
¡û
>C191120470
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
3108475
3108558
+
Leu
GAG
-
¡û
>C191120513
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
3049508
3049591
+
Leu
GAG
-
¡û
>C191156089
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
212933
212850
-
Leu
GAG
-
¡û
>C191204273
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4487247
4487330
+
Leu
GAG
-
¡û
>C191211148
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
3123130
3123213
+
Leu
GAG
-
¡û
>C191212989
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
3064799
3064882
+
Leu
GAG
-
¡û
>C191218940
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4120057
4120140
+
Leu
GAG
-
¡û
>C191219156
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
1530140
1530057
-
Leu
GAG
-
¡û
>WENV022138
AACY020625522
Marine microbial communities from Global Ocean Sampling (GOS)
672
757
+
Leu
GAG
[ENA]
>W09126986
ACKQ01000051
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
203659
203576
-
Leu
GAG
[ENA]
¡û
>W141802038
JPEP01000001
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
681944
681861
-
Leu
GAG
[ENA]
¡û
>W141802118
JPEQ01000015
Bacteroidota
Chryseobacterium sp. P1-3 [JPEQ]
72774
72691
-
Leu
GAG
[ENA]
¡û
>W141806174
JPLY01000004
Bacteroidota
Epilithonimonas lactis [JPLY]
363373
363456
+
Leu
GAG
[ENA]
¡û
>W141806210
JPLZ01000006
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
884513
884596
+
Leu
GAG
[ENA]
¡û
>W141809239
JPRI01000002
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
580314
580231
-
Leu
GAG
[ENA]
¡û
>W141809288
JPRJ01000004
Bacteroidota
Chryseobacterium piperi [JPRJ]
44384
44301
-
Leu
GAG
[ENA]
¡û
>W141809541
JPRO01000004
Bacteroidota
Chryseobacterium luteum [JPRO]
93402
93319
-
Leu
GAG
[ENA]
¡û
>W141809585
JPRP01000001
Bacteroidota
Chryseobacterium formosense [JPRP]
1131312
1131395
+
Leu
GAG
[ENA]
¡û
>W141815910
JQJM01000007
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
218571
218654
+
Leu
GAG
[ENA]
¡û
>W141817739
JQKZ01000033
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
35872
35789
-
Leu
GAG
[ENA]
¡û
>W141819101
JQMA01000032
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
35803
35720
-
Leu
GAG
[ENA]
¡û
>W1910184840
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
125859
125776
-
Leu
GAG
[ENA]
¡û
>W1910341170
FTPE01000008
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
234152
234235
+
Leu
GAG
[ENA]
¡û
>W1910808699
MUGO01000013
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
150245
150162
-
Leu
GAG
[ENA]
¡û
>W1910933659
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
153963
153880
-
Leu
GAG
[ENA]
¡û
>W1911218505
NRQT01000014
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
87134
87217
+
Leu
GAG
[ENA]
¡û
>W1911567447
PCPP01000001
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
220722
220805
+
Leu
GAG
[ENA]
¡û
>W1911586411
PIZV01000066
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
32851
32768
-
Leu
GAG
[ENA]
¡û
>W1911680455
QICI01000106
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
1055
1138
+
Leu
GAG
[ENA]
¡û
>W1911680523
QICX01000016
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
115055
115138
+
Leu
GAG
[ENA]
¡û
>W1911701207
QNUE01000006
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
151178
151261
+
Leu
GAG
[ENA]
¡û
>W1911701287
QNUF01000028
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
2203
2286
+
Leu
GAG
[ENA]
¡û
>W1911701395
QNUH01000017
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
20308
20225
-
Leu
GAG
[ENA]
¡û
>W1911701813
QNVT01000017
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
499
416
-
Leu
GAG
[ENA]
¡û
>W1911701875
QNVU01000021
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
14770
14687
-
Leu
GAG
[ENA]
¡û
>W1911749776
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
3650732
3650649
-
Leu
GAG
[ENA]
¡û
>W1911749840
QWIV01000014
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
1186332
1186249
-
Leu
GAG
[ENA]
¡û
>W1810071748
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1484509
1484592
+
Leu
GAG
[ENA]
¡û
>W1810234089
PPED02000006
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
21489
21406
-
Leu
GAG
[ENA]
¡û
>W1810234407
PPEI02000005
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
192340
192257
-
Leu
GAG
[ENA]
¡û
>W1810385694
PXUE01000004
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
187314
187231
-
Leu
GAG
[ENA]
¡û
>W1810475299
QAIX01000638
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
1198
1115
-
Leu
GAG
[ENA]
¡û
>W1810538592
QDFZ01000008
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
60800
60883
+
Leu
GAG
[ENA]
¡û
>W1810570167
QEHP01000139
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
24904
24821
-
Leu
GAG
[ENA]
¡û
>W1810609228
QGTV01000007
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
25663
25580
-
Leu
GAG
[ENA]
¡û
>W1810860738
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2687381
2687298
-
Leu
GAG
[ENA]
¡û
>C151002582
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1213735
1213818
+
Leu
GAG
[Ensembl]
¡û
>W1510072598
CDHM01000004
Bacteroidota
Chryseobacterium oranimense G311 [CDHM]
219593
219510
-
Leu
GAG
[ENA]
¡û
>W1511390853
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
331398
331481
+
Leu
GAG
[ENA]
¡û
>W1511390886
JSYL01000004
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
17590
17505
-
Leu
GAG
[ENA]
¡û
>W1511432547
JUGO01000013
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
207877
207960
+
Leu
GAG
[ENA]
¡û
>W1511432602
JUGP01000008
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
69313
69230
-
Leu
GAG
[ENA]
¡û
>W1511433012
JUGX01000012
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
230891
230974
+
Leu
GAG
[ENA]
¡û
>W1511587115
LAZY01000003
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
41282
41199
-
Leu
GAG
[ENA]
¡û
>W1511685266
LFNF01000003
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
177544
177627
+
Leu
GAG
[ENA]
¡û
>W1511685298
LFNG01000006
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
74729
74644
-
Leu
GAG
[ENA]
¡û
>W1511699520
LGIP01000019
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
383565
383482
-
Leu
GAG
[ENA]
¡û
>W1610095107
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
602010
602095
+
Leu
GAG
[ENA]
¡û
>W1610205651
FCNN01000176
Bacteroidota
Chryseobacterium indologenes [FCNN]
178
95
-
Leu
GAG
[ENA]
¡û
>W1610655853
LJOD01000076
Bacteroidota
Chryseobacterium indologenes [LJOD]
117
200
+
Leu
GAG
[ENA]
¡û
>W1610718121
LLYZ01000020
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
77470
77553
+
Leu
GAG
[ENA]
¡û
>W1610719840
LMAH01000004
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
162615
162532
-
Leu
GAG
[ENA]
¡û
>W1610740012
LMQH01000011
Bacteroidota
Chryseobacterium sp. Leaf394 [LMQH]
87544
87629
+
Leu
GAG
[ENA]
¡û
>W1610740237
LMQM01000012
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
469969
469884
-
Leu
GAG
[ENA]
¡û
>W1610911258
LSHB01000037
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
1324
1241
-
Leu
GAG
[ENA]
¡û
>W1610943299
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
208727
208644
-
Leu
GAG
[ENA]
¡û
>W1611059108
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
394113
394196
+
Leu
GAG
[ENA]
¡û
>W1611061693
MAYF01000353
Bacteroidota
Chryseobacterium contaminans [MAYF]
11318
11235
-
Leu
GAG
[ENA]
¡û
>W1611061761
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
217934
218017
+
Leu
GAG
[ENA]
¡û
>W1710097902
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
602010
602095
+
Leu
GAG
[ENA]
¡û
>W1710207152
FCNN01000176
Bacteroidota
Chryseobacterium indologenes [FCNN]
178
95
-
Leu
GAG
[ENA]
¡û
>W1710545867
FOBV01000005
Bacteroidota
Chryseobacterium taichungense [FOBV]
196985
197068
+
Leu
GAG
[ENA]
¡û
>W1710550485
FOFI01000001
Bacteroidota
Epilithonimonas lactis [FOFI]
406877
406960
+
Leu
GAG
[ENA]
¡û
>W1710554883
FOIU01000005
Bacteroidota
Chryseobacterium wanjuense [FOIU]
13210
13127
-
Leu
GAG
[ENA]
¡û
>W1710554944
FOIX01000002
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
167397
167480
+
Leu
GAG
[ENA]
¡û
>W1710557444
FOLA01000004
Bacteroidota
Kaistella jeonii [FOLA]
249214
249299
+
Leu
GAG
[ENA]
¡û
>W1710570452
FOVD01000009
Bacteroidota
Chryseobacterium oleae [FOVD]
728
645
-
Leu
GAG
[ENA]
¡û
>W1710582656
FQUD01000005
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
224967
225050
+
Leu
GAG
[ENA]
¡û
>W1710583408
FQUT01000005
Bacteroidota
Chryseobacterium arachidis [FQUT]
272552
272635
+
Leu
GAG
[ENA]
¡û
>W1710585961
FQWT01000008
Bacteroidota
Chryseobacterium oranimense [FQWT]
186221
186304
+
Leu
GAG
[ENA]
¡û
>W1710591116
FRBM01000008
Bacteroidota
Chryseobacterium contaminans [FRBM]
206654
206737
+
Leu
GAG
[ENA]
¡û
>W1710592003
FRCD01000005
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
34209
34126
-
Leu
GAG
[ENA]
¡û
>W1710594741
FSRK01000003
Bacteroidota
Epilithonimonas zeae [FSRK]
172003
171920
-
Leu
GAG
[ENA]
¡û
>W1710596698
FTMT01000015
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
118830
118913
+
Leu
GAG
[ENA]
¡û
>W1710598391
FTNY01000006
Bacteroidota
Chryseobacterium shigense [FTNY]
246809
246892
+
Leu
GAG
[ENA]
¡û
>W1710598451
FTNZ01000007
Bacteroidota
Chryseobacterium joostei [FTNZ]
194060
194143
+
Leu
GAG
[ENA]
¡û
>W1710598903
FTOI01000001
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
401141
401224
+
Leu
GAG
[ENA]
¡û
>W1710598952
FTOJ01000005
Bacteroidota
Chryseobacterium piscicola [FTOJ]
124819
124904
+
Leu
GAG
[ENA]
¡û
>W1710599096
FTOL01000006
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
26781
26698
-
Leu
GAG
[ENA]
¡û
>W1710599621
FTOV01000005
Bacteroidota
Chryseobacterium gambrini [FTOV]
46895
46810
-
Leu
GAG
[ENA]
¡û
>W1710603345
FUYZ01000002
Bacteroidota
Soonwooa buanensis [FUYZ]
49916
50001
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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