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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112144 (136 seq.)
>W1712039294
NFJO01000048
Actinomycetota
Gordonibacter sp. An232A [NFJO]
13679
13595
-
Leu
TAA
[ENA]
¡û
>W1712039312
NFJP01000002
Actinomycetota
Gordonibacter sp. An230 [NFJP]
133818
133734
-
Leu
TAA
[ENA]
¡û
>C171116350
CP021140
Actinomycetota
Eggerthella lenta C592 [CP021140]
2996497
2996413
-
Leu
TAA
-
¡û
>WENV180146784
OAUF01008774
[OAUF] human gut metagenome; faeces
203
287
+
Leu
TAA
[ENA]
¡û
>WENV180153223
OAUR01010203
[OAUR] human gut metagenome; faeces
289
373
+
Leu
TAA
[ENA]
¡û
>WENV180169511
OAVS01028471
[OAVS] human gut metagenome; faeces
305
389
+
Leu
TAA
[ENA]
¡û
>WENV180183789
OAWQ01001136
[OAWQ] human gut metagenome; faeces
2595
2511
-
Leu
TAA
[ENA]
¡û
>WENV180192608
OAXJ01032843
[OAXJ] human gut metagenome; faeces
305
221
-
Leu
TAA
[ENA]
¡û
>WENV180197981
OBAB01046070
[OBAB] human gut metagenome; faeces
89
173
+
Leu
TAA
[ENA]
¡û
>WENV180203999
OBAG01155143
[OBAG] human gut metagenome; human gut
173
89
-
Leu
TAA
[ENA]
¡û
>WENV180305425
OBJO01000074
[OBJO] human gut metagenome; human gut
19784
19700
-
Leu
TAA
[ENA]
¡û
>WENV180415031
OBVD01002513
[OBVD] human gut metagenome; faeces
291
207
-
Leu
TAA
[ENA]
¡û
>WENV180419456
OBVM01014911
[OBVM] human gut metagenome; faeces
124
208
+
Leu
TAA
[ENA]
¡û
>WENV180431333
OBWG01018946
[OBWG] human gut metagenome; faeces
439
355
-
Leu
TAA
[ENA]
¡û
>WENV180440954
OBWV01014087
[OBWV] human gut metagenome; faeces
229
145
-
Leu
TAA
[ENA]
¡û
>WENV180454291
OBXM01017644
[OBXM] human gut metagenome; faeces
397
481
+
Leu
TAA
[ENA]
¡û
>WENV180504632
OCAN01017751
[OCAN] human gut metagenome; faeces
556
472
-
Leu
TAA
[ENA]
¡û
>WENV180513576
OCHA01115890
[OCHA] human gut metagenome; human gut
119
35
-
Leu
TAA
[ENA]
¡û
>WENV180631677
OCQY01038523
[OCQY] human gut metagenome; human gut
854
770
-
Leu
TAA
[ENA]
¡û
>WENV181440914
OGDN01002655
[OGDN] human gut metagenome; human gut
19331
19247
-
Leu
TAA
[ENA]
¡û
>WENV181733927
OGQE01030634
[OGQE] human gut metagenome; faeces
550
466
-
Leu
TAA
[ENA]
¡û
>WENV181798651
OGRW01001676
[OGRW] human gut metagenome; fecal sample 7 from infant 2
128
212
+
Leu
TAA
[ENA]
¡û
>WENV181806470
OGSK01010805
[OGSK] human gut metagenome; fecal sample 2 from infant 5
355
439
+
Leu
TAA
[ENA]
¡û
>WENV181806761
OGSL01005657
[OGSL] human gut metagenome; fecal sample 6 from infant 5
527
443
-
Leu
TAA
[ENA]
¡û
>WENV181807583
OGSP01002552
[OGSP] human gut metagenome; fecal sample 9 from infant 2
535
451
-
Leu
TAA
[ENA]
¡û
>WENV181808026
OGSQ01005332
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
424
508
+
Leu
TAA
[ENA]
¡û
>WENV181808254
OGSR01001052
[OGSR] human gut metagenome; fecal sample 8 from infant 2
329
413
+
Leu
TAA
[ENA]
¡û
>WENV181817724
OGTN01006875
[OGTN] human gut metagenome; fecal sample 5 from infant 4
332
248
-
Leu
TAA
[ENA]
¡û
>WENV181862388
OGWS01004461
[OGWS] human gut metagenome; faeces
354
438
+
Leu
TAA
[ENA]
¡û
>WENV181907761
OGYA01002415
[OGYA] human gut metagenome; faeces
10240
10156
-
Leu
TAA
[ENA]
¡û
>WENV181908813
OGYB01000932
[OGYB] human gut metagenome; faeces
14617
14533
-
Leu
TAA
[ENA]
¡û
>WENV181919760
OGYI01002652
[OGYI] human gut metagenome; faeces
10704
10620
-
Leu
TAA
[ENA]
¡û
>WENV181998274
OHAU01042604
[OHAU] human gut metagenome; faeces
808
724
-
Leu
TAA
[ENA]
¡û
>WENV182402452
OIES01012971
[OIES] human gut metagenome; human gut
951
867
-
Leu
TAA
[ENA]
¡û
>WENV182818803
OJZY01002747
[OJZY] human gut metagenome; human gut
809
725
-
Leu
TAA
[ENA]
¡û
>WENV182882000
OKSA01082682
[OKSA] human gut metagenome; faeces
331
415
+
Leu
TAA
[ENA]
¡û
>WENV182961114
OKWK01000177
[OKWK] human gut metagenome; stool
38207
38291
+
Leu
TAA
[ENA]
¡û
>WENV183012500
OLEC01024033
[OLEC] human gut metagenome; human gut
197
281
+
Leu
TAA
[ENA]
¡û
>WENV183101241
OLNG01014717
[OLNG] human gut metagenome; faeces
387
471
+
Leu
TAA
[ENA]
¡û
>WENV183101523
OLNH01000227
[OLNH] human gut metagenome; faeces
19325
19241
-
Leu
TAA
[ENA]
¡û
>WENV183106509
OLNL01010195
[OLNL] human gut metagenome; faeces
911
827
-
Leu
TAA
[ENA]
¡û
>WENV183117401
OLNR01033292
[OLNR] human gut metagenome; faeces
316
400
+
Leu
TAA
[ENA]
¡û
>WENV183137019
OLOG01000714
[OLOG] human gut metagenome; faeces
7619
7703
+
Leu
TAA
[ENA]
¡û
>WENV183141122
OLOJ01001094
[OLOJ] human gut metagenome; faeces
19305
19221
-
Leu
TAA
[ENA]
¡û
>WENV183183017
OLPK01004929
[OLPK] human gut metagenome; faeces
2146
2230
+
Leu
TAA
[ENA]
¡û
>WENV183188645
OLPP01007917
[OLPP] human gut metagenome; faeces
498
414
-
Leu
TAA
[ENA]
¡û
>WENV183202289
OLPX01001706
[OLPX] human gut metagenome; faeces
361
445
+
Leu
TAA
[ENA]
¡û
>WENV183214397
OLQE01010546
[OLQE] human gut metagenome; faeces
523
607
+
Leu
TAA
[ENA]
¡û
>WENV183217904
OLQI01003640
[OLQI] human gut metagenome; faeces
339
423
+
Leu
TAA
[ENA]
¡û
>WENV183219559
OLQK01000492
[OLQK] human gut metagenome; faeces
33774
33690
-
Leu
TAA
[ENA]
¡û
>WENV183227719
OLQQ01000751
[OLQQ] human gut metagenome; faeces
14623
14539
-
Leu
TAA
[ENA]
¡û
>WENV183228958
OLQR01019612
[OLQR] human gut metagenome; faeces
686
602
-
Leu
TAA
[ENA]
¡û
>WENV183229276
OLQS01000474
[OLQS] human gut metagenome; faeces
7615
7699
+
Leu
TAA
[ENA]
¡û
>WENV183237003
OLQX01059343
[OLQX] human gut metagenome; faeces
541
457
-
Leu
TAA
[ENA]
¡û
>WENV183242955
OLRC01003102
[OLRC] human gut metagenome; faeces
7104
7188
+
Leu
TAA
[ENA]
¡û
>WENV183242981
OLRC01003443
[OLRC] human gut metagenome; faeces
7165
7249
+
Leu
TAA
[ENA]
¡û
>WENV183252468
OLRI01002186
[OLRI] human gut metagenome; faeces
6755
6671
-
Leu
TAA
[ENA]
¡û
>WENV183256414
OLRK01029202
[OLRK] human gut metagenome; faeces
743
659
-
Leu
TAA
[ENA]
¡û
>WENV183256836
OLRL01000496
[OLRL] human gut metagenome; faeces
19325
19241
-
Leu
TAA
[ENA]
¡û
>WENV183261040
OLRP01006436
[OLRP] human gut metagenome; faeces
3524
3440
-
Leu
TAA
[ENA]
¡û
>WENV183298188
OLSM01075816
[OLSM] human gut metagenome; faeces
314
230
-
Leu
TAA
[ENA]
¡û
>WENV183301170
OLSO01021274
[OLSO] human gut metagenome; faeces
317
401
+
Leu
TAA
[ENA]
¡û
>WENV183350842
OLWX01018632
[OLWX] human gut metagenome; feces
440
524
+
Leu
TAA
[ENA]
¡û
>WENV183372456
OLXW01015110
[OLXW] human gut metagenome; feces
1231
1147
-
Leu
TAA
[ENA]
¡û
>WENV183431975
OMBQ01093300
[OMBQ] human gut metagenome; feces
380
296
-
Leu
TAA
[ENA]
¡û
>WENV183500109
OMGQ01001737
[OMGQ] human gut metagenome; human gut
9525
9441
-
Leu
TAA
[ENA]
¡û
>WENV183501856
OMGS01012024
[OMGS] human gut metagenome; human gut
1430
1514
+
Leu
TAA
[ENA]
¡û
>WENV183583593
OOCP01060654
[OOCP] human gut metagenome; human gut
310
226
-
Leu
TAA
[ENA]
¡û
>WENV183770740
PPYE01443517
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1085
1001
-
Leu
TAA
[ENA]
¡û
>WENV183784108
PPYF01245658
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2205
2289
+
Leu
TAA
[ENA]
¡û
>WENV170544087
CXRE01000303
[CXRE] human gut metagenome genome assembly hE3, contig hE3_contig002263.; ENVO:feces
2197
2113
-
Leu
TAA
[ENA]
¡û
>WENV170544145
CXRF01000220
[CXRF] human gut metagenome genome assembly hE5, contig hE5_contig002372.; ENVO:feces
1857
1941
+
Leu
TAA
[ENA]
¡û
>WENV170544183
CXRG01000129
[CXRG] human gut metagenome genome assembly hE6, contig hE6_contig001993.; ENVO:feces
1860
1944
+
Leu
TAA
[ENA]
¡û
>W1810234500
PPEL01000065
Actinomycetota
Rubneribacter badeniensis ResAG-85 [PPEL]
16376
16292
-
Leu
TAA
[ENA]
¡û
>W1810240943
PPTU01000009
Actinomycetota
Eggerthella lenta W1 BHI 6 [PPTU]
109374
109458
+
Leu
TAA
[ENA]
¡û
>W1810241004
PPTV01000043
Actinomycetota
Eggerthella lenta Valencia [PPTV]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810241055
PPTW01000033
Actinomycetota
Eggerthella lenta RC4/6F [PPTW]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810241149
PPTY01000042
Actinomycetota
Eggerthella lenta FAA1-1-60AUCSF [PPTY]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810241187
PPTZ01000014
Actinomycetota
Eggerthella lenta UCSF2243 [PPTZ]
62270
62354
+
Leu
TAA
[ENA]
¡û
>W1810241232
PPUA01000015
Actinomycetota
Eggerthella lenta DSM 2243 [PPUA]
19331
19247
-
Leu
TAA
[ENA]
¡û
>W1810241286
PPUB01000043
Actinomycetota
Eggerthella lenta DSM 15644 [PPUB]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810241339
PPUC01000038
Actinomycetota
Eggerthella lenta DSM 11863 [PPUC]
2979
3063
+
Leu
TAA
[ENA]
¡û
>W1810241382
PPUD01000042
Actinomycetota
Eggerthella lenta DSM 11767 [PPUD]
2979
3063
+
Leu
TAA
[ENA]
¡û
>W1810241430
PPUE01000032
Actinomycetota
Eggerthella lenta CC8/6 D5 4 [PPUE]
2973
3057
+
Leu
TAA
[ENA]
¡û
>W1810241481
PPUF01000030
Actinomycetota
Eggerthella lenta CC8/2 BHI2 [PPUF]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810241620
PPUI01000038
Actinomycetota
Eggerthella lenta AN51LG [PPUI]
19397
19313
-
Leu
TAA
[ENA]
¡û
>W1810241726
PPUL01000003
Actinomycetota
Eggerthella lenta A2 [PPUL]
322890
322974
+
Leu
TAA
[ENA]
¡û
>W1810241808
PPUM01000037
Actinomycetota
Eggerthella lenta 32-6-I 6 NA [PPUM]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810241856
PPUN01000038
Actinomycetota
Eggerthella lenta 28B [PPUN]
19404
19320
-
Leu
TAA
[ENA]
¡û
>W1810241899
PPUO01000019
Actinomycetota
Eggerthella lenta 22C [PPUO]
38244
38328
+
Leu
TAA
[ENA]
¡û
>W1810241947
PPUP01000020
Actinomycetota
Eggerthella lenta 19C [PPUP]
19397
19313
-
Leu
TAA
[ENA]
¡û
>W1810241989
PPUQ01000016
Actinomycetota
Eggerthella lenta 16A [PPUQ]
61611
61695
+
Leu
TAA
[ENA]
¡û
>W1810242037
PPUR01000015
Actinomycetota
Eggerthella lenta 14A [PPUR]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W1810242091
PPUS01000036
Actinomycetota
Eggerthella lenta 11C [PPUS]
2979
3063
+
Leu
TAA
[ENA]
¡û
>W1810837316
QSSL01000005
Actinomycetota
Eggerthella lenta TF05-26B-4 [QSSL]
111405
111321
-
Leu
TAA
[ENA]
¡û
>W2010285633
CABMLG010000065
Actinomycetota
Eggerthellaceae bacterium [CABMLG]
16376
16292
-
Leu
TAA
[ENA]
¡û
>W2010290916
CABMOO010000015
Actinomycetota
Eggerthella lenta [CABMOO]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W2012139653
VTFY01000018
Actinomycetota
Eggerthella sp. HF-4214 [VTFY]
47300
47384
+
Leu
TAA
[ENA]
¡û
>W2012412675
WPOH01000031
Actinomycetota
Eggerthella lenta MRI-F 40 [WPOH]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W2012412721
WPOI01000036
Actinomycetota
Eggerthella lenta MRI-F 37 [WPOI]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W2012412767
WPOJ01000030
Actinomycetota
Eggerthella lenta MRI-F 36 [WPOJ]
3018
3102
+
Leu
TAA
[ENA]
¡û
>W2012412788
WPOK01000008
Actinomycetota
Eggerthella lenta ResAG-145 [WPOK]
77986
78070
+
Leu
TAA
[ENA]
¡û
>W2012412855
WPOL01000051
Actinomycetota
Eggerthella lenta ResAG-121 [WPOL]
19403
19319
-
Leu
TAA
[ENA]
¡û
>W2012412900
WPOM01000037
Actinomycetota
Eggerthella lenta ResAG-88 [WPOM]
7816
7900
+
Leu
TAA
[ENA]
¡û
>W2012412958
WPON01000042
Actinomycetota
Eggerthella lenta ResAG-49 [WPON]
2995
3079
+
Leu
TAA
[ENA]
¡û
>W2012450187
WUYV01000015
Actinomycetota
Eggerthella sp. HF-1101 [WUYV]
77631
77715
+
Leu
TAA
[ENA]
¡û
>W2012481918
WWRY01000003
Actinomycetota
Eggerthella sp. BIOML-A3 [WWRY]
20181
20097
-
Leu
TAA
[ENA]
¡û
>W2012481967
WWRZ01000003
Actinomycetota
Eggerthella sp. BIOML-A1 [WWRZ]
20162
20078
-
Leu
TAA
[ENA]
¡û
>W2110076127
CACRTT010000012
Actinomycetota
Eggerthella lenta [CACRTT]
109729
109813
+
Leu
TAA
[ENA]
¡û
>W2110342036
JADMTI010000195
Actinomycetota
Eggerthella lenta 1001713B170221_170320_C4 [JADMTI]
15055
14971
-
Leu
TAA
[ENA]
¡û
>W2110343136
JADMUV010000007
Actinomycetota
Eggerthella lenta 1001095IJ_161003_H5 [JADMUV]
137068
137152
+
Leu
TAA
[ENA]
¡û
>W2110348681
JADNCP010000014
Actinomycetota
Eggerthella lenta 1001287H_170206_A6 [JADNCP]
38237
38321
+
Leu
TAA
[ENA]
¡û
>W2110352982
JADNIO010000013
Actinomycetota
Eggerthella lenta 1001302B_160321_A1 [JADNIO]
19353
19269
-
Leu
TAA
[ENA]
¡û
>W2110353597
JADNJK010000002
Actinomycetota
Eggerthella lenta J1101437_171009_A1 [JADNJK]
336997
337081
+
Leu
TAA
[ENA]
¡û
>W2110354483
JADNKN010000017
Actinomycetota
Eggerthella lenta BSD2780120874_150323_H10 [JADNKN]
38234
38318
+
Leu
TAA
[ENA]
¡û
>W2110355763
JADNMJ010000018
Actinomycetota
Eggerthella lenta 1001311H_170123_F12 [JADNMJ]
57944
58028
+
Leu
TAA
[ENA]
¡û
>W2110356733
JADNNT010000018
Actinomycetota
Eggerthella lenta 1001136B_160425_H2 [JADNNT]
38197
38281
+
Leu
TAA
[ENA]
¡û
>W2110368404
JADPFU010000022
Actinomycetota
Eggerthella lenta J1100102_180507_B8 [JADPFU]
38258
38342
+
Leu
TAA
[ENA]
¡û
>W2110368462
JADPFW010000021
Actinomycetota
Eggerthella lenta J1101653_170612_B5 [JADPFW]
38257
38341
+
Leu
TAA
[ENA]
¡û
>W2110621096
JAHLPF010000016
Actinomycetota
Eggerthella lenta N60 [JAHLPF]
19390
19306
-
Leu
TAA
[ENA]
¡û
>W2110634321
JAHOLX010000020
Actinomycetota
Eggerthella lenta MSK.15.110 [JAHOLX]
38217
38301
+
Leu
TAA
[ENA]
¡û
>W2110719366
JAJBMS010000015
Actinomycetota
Eggerthella lenta MSK.23.99 [JAJBMS]
38216
38300
+
Leu
TAA
[ENA]
¡û
>W2110725354
JAJCHC010000001
Actinomycetota
Eggerthella sinensis DFI.5.73 [JAJCHC]
17904
17820
-
Leu
TAA
[ENA]
¡û
>C231016442
AP025575
Actinomycetota
Eggerthella lenta CE91-St33 [AP025575]
703298
703382
+
Leu
TAA
-
¡û
>C231260928
CP089331
Actinomycetota
Eggerthella lenta APC055-529-1D [CP089331]
694970
695054
+
Leu
TAA
-
¡û
>C231261022
CP089334
Actinomycetota
Eggerthella lenta APC055-920-1E [CP089334]
692837
692921
+
Leu
TAA
-
¡û
>C231261069
CP089335
Actinomycetota
Eggerthella lenta APC055-924-7B [CP089335]
1068889
1068973
+
Leu
TAA
-
¡û
>C231261116
CP089336
Actinomycetota
Eggerthella lenta APC055-928-H3-3 [CP089336]
702829
702913
+
Leu
TAA
-
¡û
>C231261210
CP089338
Actinomycetota
Eggerthella lenta APC-F2-3 [CP089338]
681030
681114
+
Leu
TAA
-
¡û
>W2130007628
CAJFJS010000165
Actinomycetota
Gordonibacter sp. An232A [CAJFJS]
3400
3316
-
Leu
TAA
[ENA]
¡û
>W2130007669
CAJFLN010000094
Actinomycetota
Gordonibacter sp. An232A [CAJFLN]
294
210
-
Leu
TAA
[ENA]
¡û
>W2310016659
BQNE01000002
Actinomycetota
Eggerthella lenta CE91-St34 [BQNE]
291887
291971
+
Leu
TAA
[ENA]
¡û
>W11107060
ACWN01000098
Actinomycetota
Eggerthella sp. 1_3_56FAA [ACWN]
38646
38730
+
Leu
TAA
[ENA]
¡û
>W11152009
AEXR01000008
Actinomycetota
Eggerthella sp. HGA1 [AEXR]
19270
19186
-
Leu
TAA
[ENA]
¡û
>W1610002067
ADLX01000003
Actinomycetota
Eggerthella lenta 1_1_60AFAA [ADLX]
19708
19624
-
Leu
TAA
[ENA]
¡û
>W1610205030
FCNB01000056
Actinomycetota
Coriobacteriaceae bacterium CHKCI002 [FCNB]
3352
3436
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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