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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112306 (11 seq.)
>WENV170136302
CENV01020512
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
74
160
+
Leu
CAG
[ENA]
¢þ
>W1910634718
LMAZ01000001
Gammaproteobacteria
Halopseudomonas gallaeciensis V113 [LMAZ]
565429
565343
-
Leu
CAG
[ENA]
¡û
>W1911285105
NTMR01000003
Gammaproteobacteria
Pseudomonas abyssi MT5 [NTMR]
117519
117433
-
Leu
CAG
[ENA]
¡û
>C151093956
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
91390
91304
-
Leu
CAG
-
¡û
>C151094008
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
92109
92023
-
Leu
CAG
-
¡û
>C151094046
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1345869
1345783
-
Leu
CAG
-
¡û
>C151094094
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
2084570
2084484
-
Leu
CAG
-
¡û
>C151094121
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
952874
952960
+
Leu
CAG
-
¡û
>C151094190
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2116753
2116667
-
Leu
CAG
-
¡û
>C151094243
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
2081314
2081228
-
Leu
CAG
-
¡û
>C161041375
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
2075581
2075495
-
Leu
CAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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