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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112327 (42 seq.)
>W131063387
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1306605
1306520
-
Leu
CAG
[ENA]
¡û
>W131087185
AOCI01000164
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
25242
25327
+
Leu
CAG
[ENA]
¡û
>W131203766
ASZQ01000219
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
40977
41062
+
Leu
CAG
[ENA]
¡û
>W1711377889
MDZH01000110
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
17582
17497
-
Leu
CAG
[ENA]
¡û
>W1711603031
MOLN01000081
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
3908
3823
-
Leu
CAG
[ENA]
¡û
>W1711772013
MVGR01000003
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
655436
655521
+
Leu
CAG
[ENA]
¡û
>C171016653
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1679312
1679227
-
Leu
CAG
-
¡û
>C171112060
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
1769428
1769513
+
Leu
CAG
-
¡û
>WENV180110572
OAPN01000877
[OAPN] marine metagenome; 2011
1263
1178
-
Leu
CAG
[ENA]
¢þ
>W141065579
AQPY01000837
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
3014
3099
+
Leu
CAG
[ENA]
¡û
>W141242360
CAIH01000062
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
11023
10940
-
Leu
CAG
[ENA]
¡û
>W141242397
CAII01000127
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
3478
3563
+
Leu
CAG
[ENA]
¡û
>W141242457
CAIJ01000403
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
17167
17082
-
Leu
CAG
[ENA]
¡û
>W141242498
CAIK01000297
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
3544
3461
-
Leu
CAG
[ENA]
¡û
>W141242510
CAIL01000006
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
14945
14862
-
Leu
CAG
[ENA]
¡û
>W141242584
CAIM01000679
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
1806
1721
-
Leu
CAG
[ENA]
¡û
>W141242608
CAIN01000216
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
3811
3726
-
Leu
CAG
[ENA]
¡û
>W141242645
CAIO01000272
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
3716
3801
+
Leu
CAG
[ENA]
¡û
>W141242703
CAIP01000440
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
15377
15462
+
Leu
CAG
[ENA]
¡û
>W141242717
CAIQ01000153
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
15707
15622
-
Leu
CAG
[ENA]
¡û
>C08006358
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
5766167
5766252
+
Leu
CAG
[Ensembl]
¡û
>WENV170680846
LFEF01027678
[LFEF] freshwater metagenome; waterbloom
20087
20002
-
Leu
CAG
[ENA]
¢þ
>C181046166
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2417371
2417456
+
Leu
CAG
-
¡û
>C191007260
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
3686895
3686980
+
Leu
CAG
-
¡û
>W1910020363
BDSG01000080
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
18705
18620
-
Leu
CAG
[ENA]
¡û
>W1910020397
BDSM01000025
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
72136
72221
+
Leu
CAG
[ENA]
¡û
>W1910038652
BEIU01000002
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
287862
287779
-
Leu
CAG
[ENA]
¡û
>W1910038696
BEIV01000024
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
59403
59488
+
Leu
CAG
[ENA]
¡û
>W1910067343
BEYQ01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
41620
41703
+
Leu
CAG
[ENA]
¡û
>W1910067409
BFAC01000010
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
7653
7570
-
Leu
CAG
[ENA]
¡û
>W1910142335
BIFY01000061
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
13740
13825
+
Leu
CAG
[ENA]
¡û
>W1910665560
MCIH01000024
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
31156
31241
+
Leu
CAG
[ENA]
¡û
>W1910768690
MOLZ01000190
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
8286
8201
-
Leu
CAG
[ENA]
¡û
>C151079384
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1683541
1683456
-
Leu
CAG
[Ensembl]
¡û
>C151080690
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
1815404
1815489
+
Leu
CAG
-
¡û
>W1510013611
BBPA01000002
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
212780
212695
-
Leu
CAG
[ENA]
¡û
>W1610550821
JXYX01000003
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
29818
29733
-
Leu
CAG
[ENA]
¡û
>W1710004755
AJHB01001921
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
1508
1593
+
Leu
CAG
[ENA]
¡û
>W1710005106
AJUS01002017
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
2408
2493
+
Leu
CAG
[ENA]
¡û
>W1710005143
AJUT01001878
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
1509
1594
+
Leu
CAG
[ENA]
¡û
>W1710005179
AJUU01001866
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
2450
2533
+
Leu
CAG
[ENA]
¡û
>W1710660698
JXYX01000003
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
29818
29733
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK