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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112351 (61 seq.)
>W1711001208
LQFB01000027
Gammaproteobacteria
Pasteurella multocida [LQFB]
85289
85373
+
Tyr
GTA
[ENA]
¡û
>W1711001684
LQFM01000045
Gammaproteobacteria
Histophilus somni [LQFM]
32218
32302
+
Tyr
GTA
[ENA]
¡û
>W1711001738
LQFO01000060
Gammaproteobacteria
Histophilus somni [LQFO]
461
377
-
Tyr
GTA
[ENA]
¡û
>W1711002197
LQFZ01000019
Gammaproteobacteria
Histophilus somni [LQFZ]
21272
21356
+
Tyr
GTA
[ENA]
¡û
>W1711002456
LQGF01000049
Gammaproteobacteria
Histophilus somni [LQGF]
32274
32358
+
Tyr
GTA
[ENA]
¡û
>W1711002871
LQGP01000033
Gammaproteobacteria
Pasteurella multocida [LQGP]
72938
73022
+
Tyr
GTA
[ENA]
¡û
>W1711308780
MAQF01000030
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
93290
93374
+
Tyr
GTA
[ENA]
¡û
>W1711765989
MUXZ01000021
Gammaproteobacteria
Canicola haemoglobinophilus [MUXZ]
18067
17983
-
Tyr
GTA
[ENA]
¡û
>W1711956414
NBTI01000004
Gammaproteobacteria
Pasteurella multocida [NBTI]
757060
756976
-
Tyr
GTA
[ENA]
¡û
>C171000383
CP007040
Gammaproteobacteria
Pasteurella multocida subsp. multocida str. HN07 [CP007040]
1700613
1700697
+
Tyr
GTA
-
¡û
>C171084195
CP018802
Gammaproteobacteria
Histophilus somni USDA-ARS-USMARC-63250 [CP018802]
194529
194445
-
Tyr
GTA
-
¡û
>C171105067
CP020345
Gammaproteobacteria
Pasteurella multocida subsp. multocida CIRMBP-0884 [CP020345]
1278087
1278003
-
Tyr
GTA
-
¡û
>C171105109
CP020347
Gammaproteobacteria
Pasteurella multocida subsp. septica CIRMBP-0873 [CP020347]
1981604
1981688
+
Tyr
GTA
-
¡û
>W131203706
ASZP01000001
Gammaproteobacteria
Pasteurella multocida subsp. gallicida P1062 [ASZP]
789202
789118
-
Tyr
GTA
[ENA]
¡û
>W141021624
AJMG01000014
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype c str. AAS4A [AJMG]
373
289
-
Tyr
GTA
[ENA]
¡û
>WENV180781407
ODIP01000003
[ODIP] human metagenome; G_DNA_Supragingival plaque
105915
105999
+
Tyr
GTA
[ENA]
¢þ
>WENV180823543
ODJW01053793
[ODJW] human metagenome; G_DNA_Supragingival plaque
425
341
-
Tyr
GTA
[ENA]
¢þ
>WENV180832364
ODKC01001284
[ODKC] human metagenome; G_DNA_Supragingival plaque
8711
8795
+
Tyr
GTA
[ENA]
¢þ
>WENV180843536
ODKN01004831
[ODKN] human metagenome; G_DNA_Supragingival plaque
4206
4290
+
Tyr
GTA
[ENA]
¢þ
>WENV181050291
ODYD01011888
[ODYD] human metagenome; G_DNA_Supragingival plaque
2137
2221
+
Tyr
GTA
[ENA]
¢þ
>WENV181160950
OEIK01070314
[OEIK] human metagenome; G_DNA_Supragingival plaque
426
342
-
Tyr
GTA
[ENA]
¢þ
>WENV183683867
ORMF010630969
[ORMF] groundwater metagenome; groundwater
1250
1334
+
Tyr
GTA
[ENA]
¢þ
>C181018059
CP015563
Gammaproteobacteria
Pasteurella multocida USDA-ARS-USMARC-60380 [CP015563]
2184106
2184190
+
Tyr
GTA
-
¡û
>C181018228
CP015566
Gammaproteobacteria
Pasteurella multocida USDA-ARS-USMARC-60712 [CP015566]
2183589
2183673
+
Tyr
GTA
-
¡û
>C181083403
CP023516
Gammaproteobacteria
Pasteurella multocida FDAARGOS_384 [CP023516]
1036590
1036674
+
Tyr
GTA
-
¡û
>C181201891
CP031552
Gammaproteobacteria
Pasteurella multocida TB168 [CP031552]
996257
996341
+
Tyr
GTA
-
¡û
>C181225415
LT906458
Gammaproteobacteria
Pasteurella multocida NCTC10322 [LT906458]
1655975
1656059
+
Tyr
GTA
-
¡û
>C191119438
CP034110
Gammaproteobacteria
Avibacterium paragallinarum FARPER-174 [CP034110]
176247
176331
+
Tyr
GTA
-
¡û
>C191208892
LR134362
Gammaproteobacteria
[Pasteurella] aerogenes NCTC13378 [LR134362]
2150129
2150213
+
Tyr
GTA
-
¡û
>W1910617620
LIUN01000001
Gammaproteobacteria
Pasteurella multocida CQ2 [LIUN]
185318
185402
+
Tyr
GTA
[ENA]
¡û
>W1910617716
LIUP01000026
Gammaproteobacteria
Pasteurella multocida B [LIUP]
597378
597462
+
Tyr
GTA
[ENA]
¡û
>W1910656860
MANI01000002
Gammaproteobacteria
Pasteurella multocida C48-1 [MANI]
1630
1546
-
Tyr
GTA
[ENA]
¡û
>W1910657231
MAPQ01000002
Gammaproteobacteria
Pasteurella multocida C51-17 [MAPQ]
329762
329846
+
Tyr
GTA
[ENA]
¡û
>W1910657380
MAPT01000001
Gammaproteobacteria
Pasteurella multocida Pm72-4 [MAPT]
417
333
-
Tyr
GTA
[ENA]
¡û
>W1911198296
NRCJ01000007
Gammaproteobacteria
Aggregatibacter kilianii PN_491 [NRCJ]
450
366
-
Tyr
GTA
[ENA]
¡û
>W1911198412
NRCL01000007
Gammaproteobacteria
Aggregatibacter kilianii PN_649 [NRCL]
450
366
-
Tyr
GTA
[ENA]
¡û
>W1911198507
NRCN01000001
Gammaproteobacteria
Aggregatibacter kilianii PN_528 [NRCN]
953586
953502
-
Tyr
GTA
[ENA]
¡û
>W1911199153
NRDA01000009
Gammaproteobacteria
Aggregatibacter aphrophilus PN_444 [NRDA]
450
366
-
Tyr
GTA
[ENA]
¡û
>W1911199363
NRDE01000031
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans HK_1002 [NRDE]
450
366
-
Tyr
GTA
[ENA]
¡û
>W1911410557
NWTT01000015
Gammaproteobacteria
Pasteurella multocida SH05 [NWTT]
25530
25614
+
Tyr
GTA
[ENA]
¡û
>W1810265958
PQVJ01000053
Gammaproteobacteria
Avibacterium gallinarum NCTC 11188 [PQVJ]
76130
76214
+
Tyr
GTA
[ENA]
¡û
>W1810578182
QEPM01000004
Gammaproteobacteria
Aggregatibacter segnis C2001002503 [QEPM]
68180
68264
+
Tyr
GTA
[ENA]
¡û
>C151006691
CP004392
Gammaproteobacteria
Pasteurella multocida OH1905 [CP004392]
1177611
1177695
+
Tyr
GTA
[Ensembl]
¡û
>C11109516
CP002667
Gammaproteobacteria
Gallibacterium anatis UMN179 [CP002667]
1428441
1428525
+
Tyr
GTA
[Ensembl]
¡û
>W1511303700
JPJP01000060
Gammaproteobacteria
Gallibacterium anatis 23T10 [JPJP]
379
295
-
Tyr
GTA
[ENA]
¡û
>W1511318159
JPXR01000070
Gammaproteobacteria
Gallibacterium anatis Gerl.3348/80 [JPXR]
9215
9299
+
Tyr
GTA
[ENA]
¡û
>W1511318463
JPXX01000047
Gammaproteobacteria
Gallibacterium genomosp. 1 1 CCM5974 [JPXX]
8668
8752
+
Tyr
GTA
[ENA]
¡û
>W1511318489
JPXY01000026
Gammaproteobacteria
Gallibacterium genomosp. 2 2 CCM5976 [JPXY]
1267
1183
-
Tyr
GTA
[ENA]
¡û
>W1511320341
JQAF01000001
Gammaproteobacteria
Pasteurella multocida subsp. multocida THD [JQAF]
449
365
-
Tyr
GTA
[ENA]
¡û
>W1511322840
JQEB01000024
Gammaproteobacteria
Pasteurella multocida subsp. multocida Faisal [JQEB]
434
350
-
Tyr
GTA
[ENA]
¡û
>W1511438908
JUNA01000009
Gammaproteobacteria
Aggregatibacter segnis 933_AAPH [JUNA]
70993
71077
+
Tyr
GTA
[ENA]
¡û
>W1511565084
LAEO01000003
Gammaproteobacteria
Avibacterium paragallinarum AVPG2015 [LAEO]
147251
147167
-
Tyr
GTA
[ENA]
¡û
>C161048283
CP012958
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans VT1169 [CP012958]
115432
115348
-
Tyr
GTA
-
¡û
>C161048322
CP012959
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 624 [CP012959]
925711
925627
-
Tyr
GTA
[Ensembl]
¡û
>W1610040285
AZTV01000698
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA3733 [AZTV]
165
249
+
Tyr
GTA
[ENA]
¡û
>W1610545254
JTJP01000064
Gammaproteobacteria
Gallibacterium genomosp. 1 [JTJP]
376
292
-
Tyr
GTA
[ENA]
¡û
>W1610575290
JZXO01000008
Gammaproteobacteria
Pasteurella multocida [JZXO]
793999
794083
+
Tyr
GTA
[ENA]
¡û
>W1611056437
MAQF01000030
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
93290
93374
+
Tyr
GTA
[ENA]
¡û
>W1710037430
AZTV01000698
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype d str. SA3733 [AZTV]
165
249
+
Tyr
GTA
[ENA]
¡û
>W1710648385
JTJP01000064
Gammaproteobacteria
Gallibacterium genomosp. 1 [JTJP]
376
292
-
Tyr
GTA
[ENA]
¡û
>W1710693358
JZXO01000008
Gammaproteobacteria
Pasteurella multocida [JZXO]
793999
794083
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK