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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112383 (77 seq.)
>W1711206657
LXEI01000003
Bacteroidota
Tamlana agarivorans [LXEI]
234552
234638
+
Leu
TAA
[ENA]
¡û
>W1711284827
LZRO01000003
Bacteroidota
Bizionia sp. APA-3 [LZRO]
79826
79910
+
Leu
TAA
[ENA]
¡û
>W1711360001
MDJD01000043
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
255033
255119
+
Leu
TAA
[ENA]
¡û
>W1711621245
MPCX01000007
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
29538
29622
+
Leu
TAA
[ENA]
¡û
>W1711622837
MPGM01000001
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
779769
779855
+
Leu
TAA
[ENA]
¡û
>W131211438
ATMR01000164
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
63429
63345
-
Leu
TAA
[ENA]
¡û
>C171092559
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
2903938
2903854
-
Leu
TAA
-
¡û
>WENV180113228
OAPQ01012408
[OAPQ] marine metagenome; ENVO: 00002149
463
379
-
Leu
TAA
[ENA]
¢þ
>WENV180113940
OAPR01063371
[OAPR] marine metagenome; seawater
205
121
-
Leu
TAA
[ENA]
¢þ
>WENV180380613
OBOR01001440
[OBOR] marine metagenome; ENVO 00002227
1464
1548
+
Leu
TAA
[ENA]
¢þ
>WENV180395802
OBPT01146656
[OBPT] marine metagenome; ENVO:00002010 seawater
230
146
-
Leu
TAA
[ENA]
¢þ
>WENV180398156
OBPZ01102163
[OBPZ] marine metagenome; ENVO:00002010
138
54
-
Leu
TAA
[ENA]
¢þ
>WENV180399888
OBQO01066411
[OBQO] marine metagenome; ENVO:00002010
134
218
+
Leu
TAA
[ENA]
¢þ
>W08004270
ABHI01000001
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
649337
649251
-
Leu
TAA
[ENA]
¡û
>WENV182557573
OJDK01000377
[OJDK] seawater metagenome; Sea water
14083
13999
-
Leu
TAA
[ENA]
¢þ
>WENV182561302
OJDV01036243
[OJDV] seawater metagenome; Sea water
599
515
-
Leu
TAA
[ENA]
¢þ
>WENV182588102
OJHO01003528
[OJHO] seawater metagenome; Sea water
3082
3166
+
Leu
TAA
[ENA]
¢þ
>W141274954
JACC01000054
Bacteroidota
Aquimarina pacifica SW150 [JACC]
35225
35309
+
Leu
TAA
[ENA]
¡û
>W141276356
JADS01000019
Bacteroidota
Olleya sp. VCSA23 [JADS]
59454
59368
-
Leu
TAA
[ENA]
¡û
>W141276394
JADT01000014
Bacteroidota
Olleya sp. VCSM12 [JADT]
96880
96794
-
Leu
TAA
[ENA]
¡û
>WENV183056825
OLHJ01026393
[OLHJ] seawater metagenome; Sea water
669
585
-
Leu
TAA
[ENA]
¢þ
>WENV183056955
OLHK01000063
[OLHK] seawater metagenome; Sea water
23280
23196
-
Leu
TAA
[ENA]
¢þ
>WENV170024481
BCQL01066731
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
3
87
+
Leu
TAA
[ENA]
¢þ
>WENV170274430
CERM01017212
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
85
1
-
Leu
TAA
[ENA]
¢þ
>WENV170537210
CEWQ01027438
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
446
360
-
Leu
TAA
[ENA]
¢þ
>WENV170601011
FUWD010152561
[FUWD] metagenome; unknown
86
2
-
Leu
TAA
[ENA]
¢þ
>WENV170782703
MAAC01011174
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
38504
38590
+
Leu
TAA
[ENA]
¢þ
>WENV170816891
MDSX01039691
[MDSX] marine metagenome; seawater
6181
6265
+
Leu
TAA
[ENA]
¢þ
>WENV170823153
MDSY01052575
[MDSY] marine metagenome; seawater
35
121
+
Leu
TAA
[ENA]
¢þ
>WENV170927255
MDTG01114255
[MDTG] marine metagenome; seawater
24
110
+
Leu
TAA
[ENA]
¢þ
>C181123939
CP025938
Bacteroidota
Tamlana carrageenivorans UJ94 [CP025938]
1246331
1246247
-
Leu
TAA
-
¡û
>C181202824
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
1684883
1684799
-
Leu
TAA
-
¡û
>C191083461
CP031964
Bacteroidota
Flavobacteriaceae bacterium AU392 [CP031964]
824424
824508
+
Leu
TAA
-
¡û
>W1910695543
MDVN01000003
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
163781
163865
+
Leu
TAA
[ENA]
¡û
>W1810102136
PGUB01000124
Bacteroidota
Aquimarina sp. I32.4 [PGUB]
11139
11223
+
Leu
TAA
[ENA]
¡û
>W1810157342
PJBW01000011
Bacteroidota
Olleya sp. 1-3 [PJBW]
33907
33991
+
Leu
TAA
[ENA]
¡û
>W1810228523
POYJ01000020
Bacteroidota
Aquimarina sediminis w01 [POYJ]
7536
7620
+
Leu
TAA
[ENA]
¡û
>W1810588106
QFRI01000001
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
1523483
1523567
+
Leu
TAA
[ENA]
¡û
>W1810591980
QFWS01000006
Bacteroidota
Flavobacteriaceae bacterium LYZ1037 LYZ1037 [QFWS]
117097
117013
-
Leu
TAA
[ENA]
¡û
>W1810596532
QGGP01000001
Bacteroidota
Xanthomarina spongicola DSM 22637 [QGGP]
736943
737027
+
Leu
TAA
[ENA]
¡û
>W1810672060
QJTD01000004
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
33157
33241
+
Leu
TAA
[ENA]
¡û
>W1810720952
QNRP01000001
Bacteroidota
Oceanihabitans sediminis DSM 28133 [QNRP]
225149
225065
-
Leu
TAA
[ENA]
¡û
>W1810758189
QPIG01000001
Bacteroidota
Oceanihabitans sediminis S9-10 [QPIG]
225181
225097
-
Leu
TAA
[ENA]
¡û
>W1810759603
QPJO01000001
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
956061
956145
+
Leu
TAA
[ENA]
¡û
>W1810787631
QRDV01000006
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
36566
36650
+
Leu
TAA
[ENA]
¡û
>W1810788359
QREI01000009
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
36461
36545
+
Leu
TAA
[ENA]
¡û
>W1810885409
QUNH01000001
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
143770
143686
-
Leu
TAA
[ENA]
¡û
>C151002366
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
906783
906699
-
Leu
TAA
[Ensembl]
¡û
>W1510012879
BBNQ01000001
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
453950
454036
+
Leu
TAA
[ENA]
¡û
>W1510013011
BBNU01000004
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
209834
209920
+
Leu
TAA
[ENA]
¡û
>C11111974
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
1634365
1634449
+
Leu
TAA
[Ensembl]
¡û
>W1511432835
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
2403806
2403722
-
Leu
TAA
[ENA]
¡û
>W11152613
AEYR01000002
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
365957
365873
-
Leu
TAA
[ENA]
¡û
>W11176850
AFXZ01000047
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
79704
79788
+
Leu
TAA
[ENA]
¡û
>W1610026004
AUYN01000009
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
87487
87573
+
Leu
TAA
[ENA]
¡û
>W1610027618
AVQK01000002
Bacteroidota
Aquimarina longa SW024 [AVQK]
172066
171980
-
Leu
TAA
[ENA]
¡û
>W1610060586
BCBW01000048
Bacteroidota
Olleya sp. ITB9 [BCBW]
34141
34227
+
Leu
TAA
[ENA]
¡û
>W121110482
ALIH01000007
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
67593
67679
+
Leu
TAA
[ENA]
¡û
>W1610587463
LDKC01000005
Bacteroidota
Tamlana sp. s12 [LDKC]
248307
248393
+
Leu
TAA
[ENA]
¡û
>W1610632931
LIQG01000024
Bacteroidota
Lacinutrix mariniflava [LIQG]
24485
24399
-
Leu
TAA
[ENA]
¡û
>W1610632977
LIQH01000029
Bacteroidota
Lacinutrix algicola [LIQH]
39245
39331
+
Leu
TAA
[ENA]
¡û
>W1610633019
LIQI01000022
Bacteroidota
Lacinutrix himadriensis [LIQI]
162270
162186
-
Leu
TAA
[ENA]
¡û
>W1610994163
LXEI01000003
Bacteroidota
Tamlana agarivorans [LXEI]
234552
234638
+
Leu
TAA
[ENA]
¡û
>W1611042612
LZRO01000003
Bacteroidota
Bizionia sp. APA-3 [LZRO]
79826
79910
+
Leu
TAA
[ENA]
¡û
>W1710022053
AUYN01000009
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
87487
87573
+
Leu
TAA
[ENA]
¡û
>W1710023852
AVQK01000002
Bacteroidota
Aquimarina longa SW024 [AVQK]
172066
171980
-
Leu
TAA
[ENA]
¡û
>W1710057841
BCBW01000048
Bacteroidota
Olleya sp. ITB9 [BCBW]
34141
34227
+
Leu
TAA
[ENA]
¡û
>W1710517008
FNCZ01000013
Bacteroidota
Winogradskyella thalassocola [FNCZ]
54702
54618
-
Leu
TAA
[ENA]
¡û
>W1710558028
FOLN01000003
Bacteroidota
Algibacter lectus [FOLN]
558054
558140
+
Leu
TAA
[ENA]
¡û
>W1710559039
FOMI01000004
Bacteroidota
Algibacter pectinivorans [FOMI]
11387
11471
+
Leu
TAA
[ENA]
¡û
>W1710565823
FORM01000010
Bacteroidota
Olleya namhaensis [FORM]
34398
34484
+
Leu
TAA
[ENA]
¡û
>W1710582205
FPKV01000001
Bacteroidota
Flaviramulus basaltis [FPKV]
1283733
1283819
+
Leu
TAA
[ENA]
¡û
>W1710587343
FQYK01000005
Bacteroidota
Algibacter luteus lutea [FQYK]
67623
67709
+
Leu
TAA
[ENA]
¡û
>W1710706593
LDKC01000005
Bacteroidota
Tamlana sp. s12 [LDKC]
248307
248393
+
Leu
TAA
[ENA]
¡û
>W1710767363
LIQG01000024
Bacteroidota
Lacinutrix mariniflava [LIQG]
24485
24399
-
Leu
TAA
[ENA]
¡û
>W1710767409
LIQH01000029
Bacteroidota
Lacinutrix algicola [LIQH]
39245
39331
+
Leu
TAA
[ENA]
¡û
>W1710767451
LIQI01000022
Bacteroidota
Lacinutrix himadriensis [LIQI]
162270
162186
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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