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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112698 (108 seq.)
>W1710783936
LJGM01000056
Gammaproteobacteria
Xanthomonas arboricola [LJGM]
25180
25266
+
Leu
CAA
[ENA]
¡û
>W1710783989
LJGN01000134
Gammaproteobacteria
Xanthomonas arboricola pv. pruni [LJGN]
14283
14197
-
Leu
CAA
[ENA]
¡û
>W1710854726
LLXS01000043
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
45703
45617
-
Leu
CAA
[ENA]
¡û
>W1710875278
LMOG01000018
Gammaproteobacteria
Xanthomonas sp. Leaf131 [LMOG]
389314
389400
+
Leu
CAA
[ENA]
¡û
>W1710937531
LOMI01000031
Gammaproteobacteria
Xanthomonas arboricola pv. pruni [LOMI]
45417
45503
+
Leu
CAA
[ENA]
¡û
>W1711071879
LSGZ01000052
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis [LSGZ]
4697
4783
+
Leu
CAA
[ENA]
¡û
>W1711210280
LXIB01000028
Gammaproteobacteria
Xanthomonas arboricola [LXIB]
198132
198046
-
Leu
CAA
[ENA]
¡û
>W1711213497
LXKK01000004
Gammaproteobacteria
Xanthomonas arboricola [LXKK]
15694
15608
-
Leu
CAA
[ENA]
¡û
>C171082833
CP018728
Gammaproteobacteria
Xanthomonas hortorum pv. gardneri JS749-3 [CP018728]
3064115
3064201
+
Leu
CAA
-
¡û
>C171082889
CP018731
Gammaproteobacteria
Xanthomonas hortorum pv. gardneri ICMP 7383 [CP018731]
2565207
2565293
+
Leu
CAA
-
¡û
>W131111493
APMC02000199
Gammaproteobacteria
Xanthomonas arboricola pv. corylina str. NCCB 100457 [APMC]
46006
46092
+
Leu
CAA
[ENA]
¡û
>W141003891
AEEU01000144
Gammaproteobacteria
Xanthomonas hortorum pv. carotae str. M081 [AEEU]
1111
1025
-
Leu
CAA
[ENA]
¡û
>W141022269
AJTL01000211
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis str. NCPPB 1447 [AJTL]
749
835
+
Leu
CAA
[ENA]
¡û
>W141212750
AZQY01000014
Gammaproteobacteria
Xanthomonas arboricola 3004 [AZQY]
74372
74286
-
Leu
CAA
[ENA]
¡û
>W141232375
BAVB01000101
Gammaproteobacteria
Xanthomonas arboricola pv. pruni str. MAFF 311562 [BAVB]
1283
1197
-
Leu
CAA
[ENA]
¡û
>W141232429
BAVC01000036
Gammaproteobacteria
Xanthomonas arboricola pv. pruni MAFF 301420 [BAVC]
8401
8315
-
Leu
CAA
[ENA]
¡û
>W141232496
BAVD01000251
Gammaproteobacteria
Xanthomonas arboricola pv. pruni MAFF 301427 [BAVD]
17594
17508
-
Leu
CAA
[ENA]
¡û
>WENV183738058
PJUD01074057
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
207
121
-
Leu
CAA
[ENA]
¢þ
>WENV183738685
PJUE01000096
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
35375
35461
+
Leu
CAA
[ENA]
¢þ
>WENV183740007
PJUF01000134
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
10903
10989
+
Leu
CAA
[ENA]
¢þ
>WENV170000177
AERA01020277
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
447
533
+
Leu
CAA
[ENA]
¢þ
>WENV170010440
APMI01017113
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1185
1271
+
Leu
CAA
[ENA]
¢þ
>WENV170011182
APMI01048208
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2958
3044
+
Leu
CAA
[ENA]
¢þ
>C181021829
CP016878
Gammaproteobacteria
Xanthomonas hortorum B07-007 [CP016878]
1132729
1132643
-
Leu
CAA
-
¡û
>W141556832
JHUQ01000010
Gammaproteobacteria
Xanthomonas arboricola pv. pruni [JHUQ]
8185
8099
-
Leu
CAA
[ENA]
¡û
>W141803854
JPHC01000027
Gammaproteobacteria
Xanthomonas arboricola pv. celebensis [JPHC]
89393
89479
+
Leu
CAA
[ENA]
¡û
>W141803959
JPHE01000082
Gammaproteobacteria
Xanthomonas arboricola pv. celebensis [JPHE]
110115
110029
-
Leu
CAA
[ENA]
¡û
>W1910692666
MDDX01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP6827 [MDDX]
476959
476873
-
Leu
CAA
[ENA]
¡û
>W1910692683
MDDY01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP7604 [MDDY]
1767938
1768024
+
Leu
CAA
[ENA]
¡û
>W1910692736
MDDZ01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP7697 [MDDZ]
2488074
2488160
+
Leu
CAA
[ENA]
¡û
>W1910692804
MDEA01000018
Gammaproteobacteria
Xanthomonas arboricola pv. corylina CFBP1159 [MDEA]
30317
30403
+
Leu
CAA
[ENA]
¡û
>W1910692865
MDEB01000002
Gammaproteobacteria
Xanthomonas arboricola pv. populi CFBP3123 [MDEB]
239130
239044
-
Leu
CAA
[ENA]
¡û
>W1910693079
MDEF01000150
Gammaproteobacteria
Xanthomonas hortorum pv. hederae CFBP4925 [MDEF]
4101
4187
+
Leu
CAA
[ENA]
¡û
>W1910693279
MDEJ01000226
Gammaproteobacteria
Xanthomonas populi CFBP1817 [MDEJ]
2818
2732
-
Leu
CAA
[ENA]
¡û
>W1910693520
MDFM01000020
Gammaproteobacteria
Xanthomonas hortorum CFBP4188 [MDFM]
28584
28670
+
Leu
CAA
[ENA]
¡û
>W1910694101
MDRU01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 1022 [MDRU]
126404
126318
-
Leu
CAA
[ENA]
¡û
>W1910694152
MDRV01000004
Gammaproteobacteria
Xanthomonas arboricola CFBP 7610 [MDRV]
413177
413263
+
Leu
CAA
[ENA]
¡û
>W1910694193
MDRW01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 6762 [MDRW]
10805
10719
-
Leu
CAA
[ENA]
¡û
>W1910694276
MDSJ01000017
Gammaproteobacteria
Xanthomonas arboricola pv. corylina CFBP 2565 [MDSJ]
30328
30414
+
Leu
CAA
[ENA]
¡û
>W1910694308
MDSK01000005
Gammaproteobacteria
Xanthomonas arboricola pv. guizotiae CFBP 7408 [MDSK]
126181
126267
+
Leu
CAA
[ENA]
¡û
>W1910694371
MDSL01000017
Gammaproteobacteria
Xanthomonas arboricola pv. guizotiae CFBP 7409 [MDSL]
47538
47624
+
Leu
CAA
[ENA]
¡û
>W1910694411
MDSM01000018
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis CFBP 8253 [MDSM]
46124
46210
+
Leu
CAA
[ENA]
¡û
>W1910745138
MIGG01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 7614 [MIGG]
204282
204196
-
Leu
CAA
[ENA]
¡û
>W1910745207
MIGH01000005
Gammaproteobacteria
Xanthomonas arboricola CFBP 6771 [MIGH]
264329
264415
+
Leu
CAA
[ENA]
¡û
>W1910745266
MIGI01000009
Gammaproteobacteria
Xanthomonas arboricola CFBP 7629 [MIGI]
79267
79353
+
Leu
CAA
[ENA]
¡û
>W1910745282
MIGJ01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 7652 [MIGJ]
464508
464594
+
Leu
CAA
[ENA]
¡û
>W1910745388
MIGL01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 8130 [MIGL]
540037
540123
+
Leu
CAA
[ENA]
¡û
>W1910745454
MIGM01000004
Gammaproteobacteria
Xanthomonas arboricola CFBP 8132 [MIGM]
254156
254070
-
Leu
CAA
[ENA]
¡û
>W1910745524
MIGN01000010
Gammaproteobacteria
Xanthomonas arboricola CFBP 8138 [MIGN]
83570
83484
-
Leu
CAA
[ENA]
¡û
>W1910745545
MIGO01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 8142 [MIGO]
1349617
1349703
+
Leu
CAA
[ENA]
¡û
>W1910745593
MIGP01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 8147 [MIGP]
946548
946634
+
Leu
CAA
[ENA]
¡û
>W1910745651
MIGQ01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 8149 [MIGQ]
239255
239169
-
Leu
CAA
[ENA]
¡û
>W1910745711
MIGR01000004
Gammaproteobacteria
Xanthomonas arboricola CFBP 8150 [MIGR]
264094
264180
+
Leu
CAA
[ENA]
¡û
>W1910745760
MIGS01000002
Gammaproteobacteria
Xanthomonas arboricola CFBP 8152 [MIGS]
62491
62405
-
Leu
CAA
[ENA]
¡û
>W1910745795
MIGT01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 8153 [MIGT]
986879
986965
+
Leu
CAA
[ENA]
¡û
>W1910745863
MIGU01000020
Gammaproteobacteria
Xanthomonas arboricola pv. arracaciae CFBP 7407 [MIGU]
43147
43061
-
Leu
CAA
[ENA]
¡û
>W1910745900
MIGV01000001
Gammaproteobacteria
Xanthomonas arboricola pv. populi CFBP 3122 [MIGV]
243174
243088
-
Leu
CAA
[ENA]
¡û
>W1910745950
MIGW01000001
Gammaproteobacteria
Xanthomonas arboricola pv. zantedeschiae CFBP 7410 [MIGW]
897764
897850
+
Leu
CAA
[ENA]
¡û
>W1910746056
MIGY01000002
Gammaproteobacteria
Xanthomonas arboricola CFBP 7645 [MIGY]
518876
518962
+
Leu
CAA
[ENA]
¡û
>W1911502921
OEQD01000021
Gammaproteobacteria
Xanthomonas arboricola pv. fragariae CFBP 6773 [OEQD]
217906
217992
+
Leu
CAA
[ENA]
¡û
>W1911502992
OEQE01000026
Gammaproteobacteria
Xanthomonas arboricola pv. fragariae CFBP 6762 [OEQE]
10783
10697
-
Leu
CAA
[ENA]
¡û
>W1911503021
OEQF01000026
Gammaproteobacteria
Xanthomonas arboricola pv. fragariae LMG 19144 [OEQF]
111671
111585
-
Leu
CAA
[ENA]
¡û
>W1911503074
OEQG01000023
Gammaproteobacteria
Xanthomonas arboricola pv. fragariae LMG 19146 [OEQG]
35057
34971
-
Leu
CAA
[ENA]
¡û
>W1911503255
OEQL01000024
Gammaproteobacteria
Xanthomonas arboricola pv. fragariae LMG 19145 [OEQL]
73578
73492
-
Leu
CAA
[ENA]
¡û
>W1911661558
QFAM01000014
Gammaproteobacteria
Xanthomonas arboricola BRIP62416 [QFAM]
269390
269476
+
Leu
CAA
[ENA]
¡û
>W1911661635
QFAN01000016
Gammaproteobacteria
Xanthomonas arboricola BRIP62414 [QFAN]
63205
63119
-
Leu
CAA
[ENA]
¡û
>W1911661697
QFAO01000025
Gammaproteobacteria
Xanthomonas arboricola BRIP62412 [QFAO]
78608
78694
+
Leu
CAA
[ENA]
¡û
>W1911661742
QFAP01000018
Gammaproteobacteria
Xanthomonas arboricola BRIP62410 [QFAP]
775168
775254
+
Leu
CAA
[ENA]
¡û
>W1911661811
QFAQ01000044
Gammaproteobacteria
Xanthomonas arboricola BRIP62432 [QFAQ]
312404
312318
-
Leu
CAA
[ENA]
¡û
>W1911708906
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
1875171
1875085
-
Leu
CAA
[ENA]
¡û
>W1810199903
PNRC01000001
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis DW3F3 [PNRC]
120378
120292
-
Leu
CAA
[ENA]
¡û
>W1810331406
PUPR01000003
Gammaproteobacteria
Xanthomonas arboricola MEDV_A37 [PUPR]
1228371
1228285
-
Leu
CAA
[ENA]
¡û
>W1810403310
PYJG01000155
Gammaproteobacteria
Xanthomonas hortorum pv. hederae WHRI 7744 [PYJG]
1917
1831
-
Leu
CAA
[ENA]
¡û
>W1810788525
QREM01000007
Gammaproteobacteria
Xanthomonas arboricola NL_P126 [QREM]
466416
466330
-
Leu
CAA
[ENA]
¡û
>W1810788769
QREQ01000002
Gammaproteobacteria
Xanthomonas arboricola MEDV_P39 [QREQ]
74301
74215
-
Leu
CAA
[ENA]
¡û
>W1810788818
QRER01000007
Gammaproteobacteria
Xanthomonas arboricola MEU_M1 [QRER]
1408558
1408472
-
Leu
CAA
[ENA]
¡û
>C151078740
CP011256
Gammaproteobacteria
Xanthomonas arboricola 17 [CP011256]
1439859
1439773
-
Leu
CAA
[Ensembl]
¡û
>WENV11100535
AERA01020277
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
447
533
+
Leu
CAA
[ENA]
¡û
>W1511541021
JZEF01000001
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis CFBP 2528 [JZEF]
1142303
1142389
+
Leu
CAA
[ENA]
¡û
>W1511541077
JZEG01000002
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis CFBP 7179 [JZEG]
720023
720109
+
Leu
CAA
[ENA]
¡û
>W1511541117
JZEH01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 7634 [JZEH]
426465
426551
+
Leu
CAA
[ENA]
¡û
>W1511541202
JZEI01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 7651 [JZEI]
2292850
2292764
-
Leu
CAA
[ENA]
¡û
>W1511542442
JZHZ01000007
Gammaproteobacteria
Xanthomonas sp. GPE 39 [JZHZ]
1690623
1690537
-
Leu
CAA
[ENA]
¡û
>W1511544507
JZJR01000011
Gammaproteobacteria
Xanthomonas hortorum SM194-10 [JZJR]
4910
4996
+
Leu
CAA
[ENA]
¡û
>W1511544598
JZJS01000109
Gammaproteobacteria
Xanthomonas hortorum SM177-10 [JZJS]
10756
10670
-
Leu
CAA
[ENA]
¡û
>W1511544633
JZJT01000103
Gammaproteobacteria
Xanthomonas hortorum SM182-10 [JZJT]
4734
4820
+
Leu
CAA
[ENA]
¡û
>W1511544697
JZJU01000154
Gammaproteobacteria
Xanthomonas hortorum SM220-10 [JZJU]
4717
4803
+
Leu
CAA
[ENA]
¡û
>W1511544751
JZJV01000111
Gammaproteobacteria
Xanthomonas hortorum SM234-10 [JZJV]
11539
11453
-
Leu
CAA
[ENA]
¡û
>W1511544790
JZJW01000234
Gammaproteobacteria
Xanthomonas hortorum SM406-11 [JZJW]
10413
10327
-
Leu
CAA
[ENA]
¡û
>W1511544850
JZJX01000255
Gammaproteobacteria
Xanthomonas hortorum SM413-11 [JZJX]
4680
4766
+
Leu
CAA
[ENA]
¡û
>W1511544857
JZJY01000007
Gammaproteobacteria
Xanthomonas hortorum SM605-11 [JZJY]
52566
52480
-
Leu
CAA
[ENA]
¡û
>W1511544936
JZJZ01000067
Gammaproteobacteria
Xanthomonas hortorum SM775-12 [JZJZ]
174622
174708
+
Leu
CAA
[ENA]
¡û
>W1511545003
JZKA01000183
Gammaproteobacteria
Xanthomonas hortorum SM795-12 [JZKA]
10403
10317
-
Leu
CAA
[ENA]
¡û
>W11144664
AEQX01000237
Gammaproteobacteria
Xanthomonas hortorum ATCC 19865 [AEQX]
683
597
-
Leu
CAA
[ENA]
¡û
>C161040645
CP012251
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis Xaj 417 [CP012251]
305864
305778
-
Leu
CAA
[Ensembl]
¡û
>W1610027257
AVPS01000005
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
177228
177314
+
Leu
CAA
[ENA]
¡û
>W1610042796
BAZI01000245
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
298
384
+
Leu
CAA
[ENA]
¡û
>W1610586817
LDJH01000013
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
246149
246063
-
Leu
CAA
[ENA]
¡û
>W1610648444
LJGM01000056
Gammaproteobacteria
Xanthomonas arboricola [LJGM]
25180
25266
+
Leu
CAA
[ENA]
¡û
>W1610648497
LJGN01000134
Gammaproteobacteria
Xanthomonas arboricola pv. pruni [LJGN]
14283
14197
-
Leu
CAA
[ENA]
¡û
>W1610717003
LLXS01000043
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
45703
45617
-
Leu
CAA
[ENA]
¡û
>W1610737624
LMOG01000018
Gammaproteobacteria
Xanthomonas sp. Leaf131 [LMOG]
389314
389400
+
Leu
CAA
[ENA]
¡û
>W1610911139
LSGZ01000052
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis [LSGZ]
4697
4783
+
Leu
CAA
[ENA]
¡û
>W1610998006
LXIB01000028
Gammaproteobacteria
Xanthomonas arboricola [LXIB]
198132
198046
-
Leu
CAA
[ENA]
¡û
>W1611000501
LXKK01000004
Gammaproteobacteria
Xanthomonas arboricola [LXKK]
15694
15608
-
Leu
CAA
[ENA]
¡û
>W1710023491
AVPS01000005
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
177228
177314
+
Leu
CAA
[ENA]
¡û
>W1710039956
BAZI01000245
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
298
384
+
Leu
CAA
[ENA]
¡û
>W1710705947
LDJH01000013
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
246149
246063
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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