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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112742 (95 seq.)
>W1710785092
LJHO01000004
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
473723
473809
+
Leu
GAG
[ENA]
¡û
>W1710785431
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
19363
19277
-
Leu
GAG
[ENA]
¡û
>W1710785544
LJHY01000018
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
92721
92635
-
Leu
GAG
[ENA]
¡û
>W1710858205
LMAU01000001
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
410218
410132
-
Leu
GAG
[ENA]
¡û
>W1710866242
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
390148
390062
-
Leu
GAG
[ENA]
¡û
>W1710871141
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
396421
396335
-
Leu
GAG
[ENA]
¡û
>W1711051712
LRSE01000011
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
8213
8127
-
Leu
GAG
[ENA]
¡û
>W1711072910
LSIA01000223
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
34956
34870
-
Leu
GAG
[ENA]
¡û
>W1711253293
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
2343131
2343217
+
Leu
GAG
[ENA]
¡û
>W1711793290
MWLM01000069
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
140756
140670
-
Leu
GAG
[ENA]
¡û
>C171056581
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
3443658
3443744
+
Leu
GAG
-
¡û
>C171096161
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
2343131
2343217
+
Leu
GAG
-
¡û
>C171108860
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
1605149
1605235
+
Leu
GAG
-
¡û
>W131104450
APCQ01000188
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
5407
5321
-
Leu
GAG
[ENA]
¡û
>C014678
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
742029
742115
+
Leu
GAG
[Ensembl]
¡û
>WENV180019274
FTBS01000528
[FTBS] metagenome; soil
5912
5826
-
Leu
GAG
[ENA]
¢þ
>WENV180099515
NMRC01010643
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
2
88
+
Leu
GAG
[ENA]
¢þ
>WENV181223201
OFDC01003076
[OFDC] hot springs metagenome; Water
5340
5426
+
Leu
GAG
[ENA]
¢þ
>WENV181842765
OGVT01018661
[OGVT] freshwater metagenome; freshwater
454
368
-
Leu
GAG
[ENA]
¢þ
>WENV183730404
PJTS01000005
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
194090
194176
+
Leu
GAG
[ENA]
¢þ
>WENV183731487
PJTT01000008
[PJTT] soil metagenome; Soil (2) enriched on wood chips
487107
487021
-
Leu
GAG
[ENA]
¢þ
>WENV183731555
PJTT01000022
[PJTT] soil metagenome; Soil (2) enriched on wood chips
194090
194176
+
Leu
GAG
[ENA]
¢þ
>WENV183732983
PJTY01000012
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
275551
275637
+
Leu
GAG
[ENA]
¢þ
>WENV183733997
PJTZ01000015
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
275551
275637
+
Leu
GAG
[ENA]
¢þ
>WENV183738586
PJUE01000031
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
76719
76805
+
Leu
GAG
[ENA]
¢þ
>WENV170010993
APMI01038372
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2363
2277
-
Leu
GAG
[ENA]
¢þ
>WENV170176173
CEOS01047878
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
38359
38273
-
Leu
GAG
[ENA]
¢þ
>WENV170191621
CEPD01041301
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
156
242
+
Leu
GAG
[ENA]
¢þ
>WENV170278753
CERQ01125139
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
887
973
+
Leu
GAG
[ENA]
¢þ
>WENV170645677
JPYU01001808
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
157
243
+
Leu
GAG
[ENA]
¢þ
>W141484946
JFYZ01000011
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
52424
52510
+
Leu
GAG
[ENA]
¡û
>W141484989
JFZA02000013
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
12864
12950
+
Leu
GAG
[ENA]
¡û
>C181072801
CP022889
Alphaproteobacteria
Tsuneonella mangrovi C9-11 [CP022889]
1916841
1916927
+
Leu
GAG
-
¡û
>C181192060
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
3093634
3093548
-
Leu
GAG
-
¡û
>C191057060
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
1417351
1417265
-
Leu
GAG
-
¡û
>C191155771
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
1684975
1684889
-
Leu
GAG
-
¡û
>W09100295
AAAV03000001
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
919625
919711
+
Leu
GAG
[ENA]
¡û
>W1910651509
LYMM01000032
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
78954
79040
+
Leu
GAG
[ENA]
¡û
>W1910822140
MWMO01000002
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
122874
122960
+
Leu
GAG
[ENA]
¡û
>W1911737908
QTTB01000005
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
299335
299421
+
Leu
GAG
[ENA]
¡û
>SRA1001729
SRR001308.20491
Metagenomic characterization of a wastewater treatment plant (SRP000180)
11
97
+
Leu
GAG
[SRA]
>SRA1002055
SRR001308.215553
Metagenomic characterization of a wastewater treatment plant (SRP000180)
164
250
+
Leu
GAG
[SRA]
>W1810120400
PHSO01000005
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
458768
458854
+
Leu
GAG
[ENA]
¡û
>W1810121230
PHUF01000004
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
169469
169555
+
Leu
GAG
[ENA]
¡û
>W1810195469
PKRO01000021
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
43997
43911
-
Leu
GAG
[ENA]
¡û
>W1810195678
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1431199
1431285
+
Leu
GAG
[ENA]
¡û
>W1810239601
PPSM01000014
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
191417
191503
+
Leu
GAG
[ENA]
¡û
>SRA1005835
SRR014587.277668
Metagenomic analysis of viruses in reclaimed water (SRP000673)
109
23
-
Leu
GAG
[SRA]
>W1810463747
PZZU01000021
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
26378
26464
+
Leu
GAG
[ENA]
¡û
>W1810477338
QAOS01000021
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
26378
26464
+
Leu
GAG
[ENA]
¡û
>W1810513892
QBUA01000021
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
26378
26464
+
Leu
GAG
[ENA]
¡û
>W1810514105
QBUE01000021
Alphaproteobacteria
Novosphingobium sp. GV079 [QBUE]
26378
26464
+
Leu
GAG
[ENA]
¡û
>W1810514314
QBUI01000021
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
26378
26464
+
Leu
GAG
[ENA]
¡û
>W1810597595
QGHL01000004
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
564712
564626
-
Leu
GAG
[ENA]
¡û
>W1810677119
QKMM01000003
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
300461
300375
-
Leu
GAG
[ENA]
¡û
>C151048356
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
1877560
1877646
+
Leu
GAG
[Ensembl]
¡û
>C151086204
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
2894301
2894215
-
Leu
GAG
[Ensembl]
¡û
>W1510012835
BBNP01000026
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
181888
181974
+
Leu
GAG
[ENA]
¡û
>W1510024388
CCBH010000148
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
35559
35473
-
Leu
GAG
[ENA]
¡û
>C11116205
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
620980
620894
-
Leu
GAG
[Ensembl]
¡û
>W1510757035
JACU01000005
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
420704
420618
-
Leu
GAG
[ENA]
¡û
>W1511357013
JRVC01000007
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
188121
188035
-
Leu
GAG
[ENA]
¡û
>W1511397995
JTDI01000001
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
772706
772620
-
Leu
GAG
[ENA]
¡û
>W1511519387
JXZE01000002
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
505225
505139
-
Leu
GAG
[ENA]
¡û
>C161093694
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1314508
1314422
-
Leu
GAG
[Ensembl]
¡û
>C161099965
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
570518
570432
-
Leu
GAG
[Ensembl]
¡û
>W121009698
AGFM01000030
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
52810
52724
-
Leu
GAG
[ENA]
¡û
>W121081082
AKFJ01000081
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
95378
95464
+
Leu
GAG
[ENA]
¡û
>W121086736
AKKE01000123
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
8561
8475
-
Leu
GAG
[ENA]
¡û
>W121119238
ALVC01000220
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
26588
26502
-
Leu
GAG
[ENA]
¡û
>W1610071204
BCTW01000017
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
96234
96148
-
Leu
GAG
[ENA]
¡û
>W1610071256
BCTX01000085
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
3432
3346
-
Leu
GAG
[ENA]
¡û
>W1610076584
BCYV01000034
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
3130
3044
-
Leu
GAG
[ENA]
¡û
>W1610076960
BCZD01000025
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
12684
12770
+
Leu
GAG
[ENA]
¡û
>W1610076999
BCZE01000028
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
22763
22849
+
Leu
GAG
[ENA]
¡û
>W1610077053
BCZF01000034
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
27172
27086
-
Leu
GAG
[ENA]
¡û
>W1610648898
LJHO01000004
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
473723
473809
+
Leu
GAG
[ENA]
¡û
>W1610649237
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
19363
19277
-
Leu
GAG
[ENA]
¡û
>W1610649350
LJHY01000018
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
92721
92635
-
Leu
GAG
[ENA]
¡û
>W1610720551
LMAU01000001
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
410218
410132
-
Leu
GAG
[ENA]
¡û
>W1610728588
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
390148
390062
-
Leu
GAG
[ENA]
¡û
>W1610733487
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
396421
396335
-
Leu
GAG
[ENA]
¡û
>W1610892841
LRSE01000011
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
8213
8127
-
Leu
GAG
[ENA]
¡û
>W1610912170
LSIA01000223
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
34956
34870
-
Leu
GAG
[ENA]
¡û
>W1611017830
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
2343131
2343217
+
Leu
GAG
[ENA]
¡û
>W1710068569
BCTW01000017
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
96234
96148
-
Leu
GAG
[ENA]
¡û
>W1710068621
BCTX01000085
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
3432
3346
-
Leu
GAG
[ENA]
¡û
>W1710074273
BCYV01000034
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
3130
3044
-
Leu
GAG
[ENA]
¡û
>W1710074649
BCZD01000025
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
12684
12770
+
Leu
GAG
[ENA]
¡û
>W1710074688
BCZE01000028
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
22763
22849
+
Leu
GAG
[ENA]
¡û
>W1710074742
BCZF01000034
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
27172
27086
-
Leu
GAG
[ENA]
¡û
>W1710507962
FMVR01000001
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
33877
33963
+
Leu
GAG
[ENA]
¡û
>W1710562087
FOOR01000021
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
4021
3935
-
Leu
GAG
[ENA]
¡û
>W1710604588
FVZE01000006
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
227970
227884
-
Leu
GAG
[ENA]
¡û
>W1710605992
FWXL01000004
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
31039
30953
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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