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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113007 (7 seq.)
>At1208
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1283727
1283811
+
Leu
CAG
[Ensembl]
¡û
>WENV170722930
LSQX01249029
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11009
11094
+
Leu
CAG
[ENA]
¡û
>WENV170724761
LSQX01318234
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4550
4635
+
Leu
CAG
[ENA]
¡û
>W1910635204
LMVO01000012
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
125610
125695
+
Leu
CAG
[ENA]
¡û
>W2010782234
LMVO01000012
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
125610
125695
+
Leu
CAG
[ENA]
¡û
>W2011589142
SIJA01000076
Methanobacteriota
Methanocorpusculum sp. GPch4 [SIJA]
51290
51205
-
Leu
CAG
[ENA]
¡û
>W1610024419
AUMX01000004
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
21144
21059
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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