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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113612 (6 seq.)
>WENV170627298
FUWD013232509
[FUWD] metagenome; unknown
9510
9428
-
Leu
GAG
[ENA]
¡û
>SRA1018503
SRR035082.301683
454 Sequencing (SRP001803)
443
361
-
Leu
GAG
[SRA]
>SRA1040271
SRR035091.70396
454 Sequencing (SRP001812)
438
356
-
Leu
GAG
[SRA]
>SRA1041480
SRR035091.248411
454 Sequencing (SRP001812)
438
520
+
Leu
GAG
[SRA]
>SRA1048517
SRR035094.192067
454 Sequencing (SRP001815)
209
127
-
Leu
GAG
[SRA]
>SRA1050240
SRR035095.219433
454 Sequencing (SRP001816)
161
79
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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