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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113688 (20 seq.)
>W143001657
AUQD01000138
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Heidelberg str. SARA33 [AUQD]
5715
5795
+
Pseudo
GTA
[ENA]
¡û
>W1610601002
LFOA01000389
Gammaproteobacteria
Klebsiella pneumoniae [LFOA]
7956
7871
-
Tyr
GTA
[ENA]
¡û
>W1630016771
LRCG01000127
Gammaproteobacteria
Klebsiella aerogenes [LRCG]
3796
3876
+
Pseudo
GTA
[ENA]
¡û
>W1630019458
LVVH01000070
Gammaproteobacteria
Klebsiella aerogenes [LVVH]
3729
3809
+
Pseudo
GTA
[ENA]
¡û
>W1730019135
LRCG01000127
Gammaproteobacteria
Klebsiella aerogenes [LRCG]
3796
3876
+
Pseudo
GTA
[ENA]
¡û
>W1730022696
LVVH01000070
Gammaproteobacteria
Klebsiella aerogenes [LVVH]
3729
3809
+
Pseudo
GTA
[ENA]
¡û
>W1730033549
MPXX03000042
Gammaproteobacteria
Klebsiella pneumoniae [MPXX]
109572
109652
+
Pseudo
GTA
[ENA]
¡û
>W1730034631
MTHH01000017
Gammaproteobacteria
Yersinia enterocolitica [MTHH]
4512
4592
+
Pseudo
GTA
[ENA]
¡û
>W1730038059
NAAV01000082
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [NAAV]
278625
278705
+
Pseudo
GTA
[ENA]
¡û
>W1730038757
NDBG01000078
Gammaproteobacteria
Klebsiella pneumoniae [NDBG]
109842
109922
+
Pseudo
GTA
[ENA]
¡û
>W1730038820
NDCO01000017
Gammaproteobacteria
Klebsiella pneumoniae [NDCO]
109835
109915
+
Pseudo
GTA
[ENA]
¡û
>W1730038949
NDEW01000178
Gammaproteobacteria
Klebsiella pneumoniae [NDEW]
109541
109621
+
Pseudo
GTA
[ENA]
¡û
>W1730039974
NEZF01000029
Gammaproteobacteria
Klebsiella pneumoniae [NEZF]
505705
505785
+
Pseudo
GTA
[ENA]
¡û
>W1730040039
NFAL01000014
Gammaproteobacteria
Klebsiella pneumoniae [NFAL]
109889
109969
+
Pseudo
GTA
[ENA]
¡û
>W1730040085
NFBH01000042
Gammaproteobacteria
Klebsiella pneumoniae [NFBH]
108295
108375
+
Pseudo
GTA
[ENA]
¡û
>W1730040095
NFBM01000018
Gammaproteobacteria
Klebsiella pneumoniae [NFBM]
109541
109621
+
Pseudo
GTA
[ENA]
¡û
>W1730040121
NFBZ01000042
Gammaproteobacteria
Klebsiella pneumoniae [NFBZ]
109541
109621
+
Pseudo
GTA
[ENA]
¡û
>W1730040900
NFWY01000059
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae [NFWY]
397708
397788
+
Pseudo
GTA
[ENA]
¡û
>W1730040977
NFYF01000001
Gammaproteobacteria
Klebsiella pneumoniae [NFYF]
660004
660084
+
Pseudo
GTA
[ENA]
¡û
>W1710722445
LFOA01000389
Gammaproteobacteria
Klebsiella pneumoniae [LFOA]
7956
7871
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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