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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113700 (9 seq.)
>WENV183707095
PDWI01006661
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
152
69
-
Tyr
GTA
[ENA]
¡û
>WENV183707611
PDWI01009375
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7241
7322
+
Tyr
GTA
[ENA]
¡û
>WENV183708925
PDWI01021464
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
91
10
-
Tyr
GTA
[ENA]
¡û
>WENV183710689
PDWI01051716
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3235
3154
-
Tyr
GTA
[ENA]
¡û
>WENV183712233
PDWI01093037
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
288
207
-
Tyr
GTA
[ENA]
¡û
>WENV183712457
PDWI01100524
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2052
2135
+
Tyr
GTA
[ENA]
¡û
>WENV183720245
PDWJ01030333
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3077
2996
-
Tyr
GTA
[ENA]
¡û
>W1610046324
BBCG01000050
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
2050
2133
+
Tyr
GTA
[ENA]
¡û
>W1710043120
BBCG01000050
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
2050
2133
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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