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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113739 (57 seq.)
>WENV180414236
OBVC01009135
[OBVC] human gut metagenome; faeces
533
450
-
Leu
TAG
[ENA]
¢þ
>WENV180462505
OBYB01004449
[OBYB] human gut metagenome; faeces
1734
1651
-
Leu
TAG
[ENA]
¢þ
>WENV181344007
OFMJ01040886
[OFMJ] human gut metagenome; human gut
134
217
+
Leu
TAG
[ENA]
¢þ
>W141145364
AWUN01000001
Actinomycetota
Bifidobacterium sp. 7101 [AWUN]
299059
298976
-
Leu
TAG
[ENA]
¡û
>W141145425
AWUO01000005
Actinomycetota
Bifidobacterium sp. A11 [AWUO]
10106
10025
-
Leu
TAG
[ENA]
¡û
>WENV183214311
OLQE01005667
[OLQE] human gut metagenome; faeces
2914
2832
-
Leu
TAG
[ENA]
¢þ
>WENV183307638
OLTK01002069
[OLTK] human gut metagenome; faeces
503
421
-
Leu
TAG
[ENA]
¢þ
>WENV183562398
OOBW01000085
[OOBW] human gut metagenome; human gut
44513
44596
+
Leu
TAG
[ENA]
¢þ
>WENV170637222
JFBN01314568
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1551
1468
-
Leu
TAG
[ENA]
¢þ
>C181027246
CP017696
Actinomycetota
Bifidobacterium asteroides DSM 20089 [CP017696]
258067
257986
-
Leu
TAG
-
¡û
>W141524068
JGYU01000003
Actinomycetota
Bifidobacterium choerinum [JGYU]
17619
17538
-
Leu
TAG
[ENA]
¡û
>W141524207
JGYW01000008
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JGYW]
72193
72112
-
Leu
TAG
[ENA]
¡û
>W141524244
JGYX01000005
Actinomycetota
Bifidobacterium pullorum gallinarum [JGYX]
207194
207277
+
Leu
TAG
[ENA]
¡û
>W141524748
JGZI01000001
Actinomycetota
Bifidobacterium psychraerophilum [JGZI]
41984
41903
-
Leu
TAG
[ENA]
¡û
>W141524823
JGZJ01000009
Actinomycetota
Bifidobacterium pullorum [JGZJ]
146878
146961
+
Leu
TAG
[ENA]
¡û
>W141524957
JGZM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JGZM]
229410
229327
-
Leu
TAG
[ENA]
¡û
>W141525141
JGZP01000027
Actinomycetota
Bifidobacterium stellenboschense [JGZP]
8310
8391
+
Leu
TAG
[ENA]
¡û
>C191143385
CP035464
Actinomycetota
Bifidobacterium pullorum subsp. gallinarum CACC 514 [CP035464]
2178410
2178493
+
Leu
TAG
-
¡û
>W09111540
ABXB01000003
Actinomycetota
Bifidobacterium gallicum DSM 20093 [ABXB]
8065
8146
+
Leu
TAG
[ENA]
¡û
>W1910829228
MWWX01000011
Actinomycetota
Bifidobacterium lemurum DSM 28807 [MWWX]
10724
10805
+
Leu
TAG
[ENA]
¡û
>W1910829380
MWXA01000007
Actinomycetota
Bifidobacterium aquikefiri LMG 28769 [MWXA]
142338
142419
+
Leu
TAG
[ENA]
¡û
>W1911078294
NMWT01000022
Actinomycetota
Bifidobacterium parmae 77 [NMWT]
12141
12222
+
Leu
TAG
[ENA]
¡û
>W1911162342
NPOQ01000013
Actinomycetota
Bifidobacterium sp. wkB344 [NPOQ]
165055
164974
-
Leu
TAG
[ENA]
¡û
>W1911162363
NPOR01000001
Actinomycetota
Bifidobacterium sp. wkB338 [NPOR]
51990
52071
+
Leu
TAG
[ENA]
¡û
>W1810049614
PCHJ01000008
Actinomycetota
Bifidobacterium asteroides 1460B [PCHJ]
5562
5481
-
Leu
TAG
[ENA]
¡û
>W1810120944
PHUA01000001
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [PHUA]
241563
241644
+
Leu
TAG
[ENA]
¡û
>W1810603493
QGLH01000001
Actinomycetota
Bifidobacterium asteroides ESL0170 [QGLH]
441178
441097
-
Leu
TAG
[ENA]
¡û
>W1810603565
QGLI01000005
Actinomycetota
Bifidobacterium indicum ESL0197 [QGLI]
31574
31492
-
Leu
TAG
[ENA]
¡û
>W1810603571
QGLJ01000005
Actinomycetota
Bifidobacterium asteroides ESL0198 [QGLJ]
284993
284912
-
Leu
TAG
[ENA]
¡û
>W1810603614
QGLK01000001
Actinomycetota
Bifidobacterium asteroides ESL0199 [QGLK]
392825
392744
-
Leu
TAG
[ENA]
¡û
>W1810603648
QGLL01000001
Actinomycetota
Bifidobacterium asteroides ESL0200 [QGLL]
385627
385546
-
Leu
TAG
[ENA]
¡û
>C151008632
CP006018
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [CP006018]
360537
360454
-
Leu
TAG
[Ensembl]
¡û
>C151021880
CP007287
Actinomycetota
Bifidobacterium coryneforme LMG18911 [CP007287]
373786
373703
-
Leu
TAG
[Ensembl]
¡û
>W1511483979
JWME01000004
Actinomycetota
Bifidobacterium asteroides Bin2 [JWME]
233579
233498
-
Leu
TAG
[ENA]
¡û
>W1511484019
JWMF01000003
Actinomycetota
Bifidobacterium mellis Bin7 [JWMF]
292727
292646
-
Leu
TAG
[ENA]
¡û
>W1511501511
JXBX01000006
Actinomycetota
Bifidobacterium coryneforme Bma6 [JXBX]
32115
32032
-
Leu
TAG
[ENA]
¡û
>W1511505364
JXJS01000005
Actinomycetota
Bifidobacterium asteroides Hma3 [JXJS]
275981
275900
-
Leu
TAG
[ENA]
¡û
>W1610060684
BCFK01000050
Actinomycetota
Bifidobacterium aesculapii [BCFK]
12669
12588
-
Leu
TAG
[ENA]
¡û
>C131003039
CP003325
Actinomycetota
Bifidobacterium asteroides PRL2011 [CP003325]
477345
477264
-
Leu
TAG
[Ensembl]
¡û
>W1610518573
JDTM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
221849
221766
-
Leu
TAG
[ENA]
¡û
>W1610518969
JDTU01000026
Actinomycetota
Bifidobacterium asteroides DSM 20089 [JDTU]
30017
30098
+
Leu
TAG
[ENA]
¡û
>W1610519071
JDTW01000015
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JDTW]
7508
7589
+
Leu
TAG
[ENA]
¡û
>W1610519433
JDUE01000011
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [JDUE]
25365
25282
-
Leu
TAG
[ENA]
¡û
>W1610519474
JDUF01000021
Actinomycetota
Bifidobacterium coryneforme DSM 20216 [JDUF]
32585
32668
+
Leu
TAG
[ENA]
¡û
>W1610519577
JDUI01000003
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
38966
39049
+
Leu
TAG
[ENA]
¡û
>W1610519805
JDUN01000001
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
204821
204904
+
Leu
TAG
[ENA]
¡û
>W1610519975
JDUQ01000045
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [JDUQ]
3815
3734
-
Leu
TAG
[ENA]
¡û
>W1710057939
BCFK01000050
Actinomycetota
Bifidobacterium aesculapii [BCFK]
12669
12588
-
Leu
TAG
[ENA]
¡û
>W1710082891
BDIS01000001
Actinomycetota
Bifidobacterium lemurum [BDIS]
131858
131777
-
Leu
TAG
[ENA]
¡û
>W1710614093
JDTM01000002
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
221849
221766
-
Leu
TAG
[ENA]
¡û
>W1710614424
JDTU01000026
Actinomycetota
Bifidobacterium asteroides DSM 20089 [JDTU]
30017
30098
+
Leu
TAG
[ENA]
¡û
>W1710614526
JDTW01000015
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JDTW]
7508
7589
+
Leu
TAG
[ENA]
¡û
>W1710614888
JDUE01000011
Actinomycetota
Bifidobacterium indicum LMG 11587 = DSM 20214 [JDUE]
25365
25282
-
Leu
TAG
[ENA]
¡û
>W1710614929
JDUF01000021
Actinomycetota
Bifidobacterium coryneforme DSM 20216 [JDUF]
32585
32668
+
Leu
TAG
[ENA]
¡û
>W1710615032
JDUI01000003
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
38966
39049
+
Leu
TAG
[ENA]
¡û
>W1710615218
JDUN01000001
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
204821
204904
+
Leu
TAG
[ENA]
¡û
>W1710615388
JDUQ01000045
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [JDUQ]
3815
3734
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK