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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113739 (10 seq.)
>W1910183479
BJNT01000015
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
16343
16427
+
Leu
TAG
[ENA]
¡û
>W2010097094
BJNT01000015
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
16343
16427
+
Leu
TAG
[ENA]
¡û
>C201112054
CP042429
Actinomycetota
Corynebacterium nuruki S6-4 [CP042429]
1338305
1338222
-
Leu
TAG
-
¡û
>W10124080
AEAU01000077
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
20506
20590
+
Leu
TAG
[ENA]
¡û
>C11106658
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
866910
866994
+
Leu
TAG
[Ensembl]
¡û
>W11130917
AEAU01000077
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
20506
20590
+
Leu
TAG
[ENA]
¡û
>W11164173
AFIZ01000042
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
85232
85148
-
Leu
TAG
[ENA]
¡û
>W1610163627
FAUH01000005
Actinomycetota
Corynebacterium variabile [FAUH]
20781
20865
+
Leu
TAG
[ENA]
¡û
>C131005325
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
766736
766820
+
Leu
TAG
[Ensembl]
¡û
>W1710165294
FAUH01000005
Actinomycetota
Corynebacterium variabile [FAUH]
20781
20865
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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