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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113795 (36 seq.)
>C171085168
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2958949
2959033
+
Leu
TAG
-
¡û
>W131050723
AMXA01000014
Betaproteobacteria
Thauera sp. 28 [AMXA]
59720
59636
-
Leu
TAG
[ENA]
¡û
>W131050765
AMXB01000007
Betaproteobacteria
Thauera sp. 27 [AMXB]
106435
106519
+
Leu
TAG
[ENA]
¡û
>W131050797
AMXC01000001
Betaproteobacteria
Thauera sp. 63 [AMXC]
75214
75130
-
Leu
TAG
[ENA]
¡û
>W131050937
AMXE01000050
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
22158
22242
+
Leu
TAG
[ENA]
¡û
>W131050997
AMXF01000208
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
5235
5151
-
Leu
TAG
[ENA]
¡û
>C001370
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
4035847
4035763
-
Leu
TAG
[Ensembl]
¡û
>W141078546
ATJV01000114
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
47820
47736
-
Leu
TAG
[ENA]
¡û
>WENV170000184
AERA01020916
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
61
145
+
Leu
TAG
[ENA]
¡û
>WENV170650754
JRYE01016114
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
180
264
+
Leu
TAG
[ENA]
¡û
>WENV170650755
JRYE01016115
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
203
287
+
Leu
TAG
[ENA]
¡û
>C181081457
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
1981719
1981803
+
Leu
TAG
-
¡û
>W141561725
JHYR01000011
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
23252
23336
+
Leu
TAG
[ENA]
¡û
>W1911114354
NOIH01000007
Betaproteobacteria
Thauera sp. KNDSS-Mac4 [NOIH]
324066
324150
+
Leu
TAG
[ENA]
¡û
>W1810679176
QKOE01000019
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
46874
46790
-
Leu
TAG
[ENA]
¡û
>W2011008938
NOIH01000007
Betaproteobacteria
Thauera sp. KNDSS-Mac4 [NOIH]
324066
324150
+
Leu
TAG
[ENA]
¡û
>W2011622900
SLXG01000009
Betaproteobacteria
Crenobacter luteus DSM 27258 [SLXG]
19979
19895
-
Leu
TAG
[ENA]
¡û
>W2011693791
SSXV01000017
Betaproteobacteria
Thauera sp. 2A1 [SSXV]
91652
91568
-
Leu
TAG
[ENA]
¡û
>W2012437936
WTVI01000026
Betaproteobacteria
Azoarcus communis SWub3 = DSM 12120 [WTVI]
46874
46790
-
Leu
TAG
[ENA]
¡û
>W2012437958
WTVJ01000003
Betaproteobacteria
Azoarcus communis LMG 5514 [WTVJ]
24444
24528
+
Leu
TAG
[ENA]
¡û
>W2110263248
JACTAH010000001
Betaproteobacteria
Thauera sp. CAU 1555 [JACTAH]
1489349
1489433
+
Leu
TAG
[ENA]
¡û
>W2110568459
JAGRRD010000001
Betaproteobacteria
Azoarcus sp. L1K30 [JAGRRD]
1344503
1344419
-
Leu
TAG
[ENA]
¡û
>W10111466
ADDK01000002
Betaproteobacteria
Azospira oryzae PS [ADDK]
286984
286900
-
Leu
TAG
[ENA]
¡û
>C231253966
CP088935
Betaproteobacteria
Thauera sp. WB-2 [CP088935]
2327552
2327636
+
Leu
TAG
-
¡û
>C231394163
CP097870
Betaproteobacteria
Thauera sp. GDN1 [CP097870]
2247242
2247326
+
Leu
TAG
-
¡û
>C241385218
OW011623
Betaproteobacteria
Thauera sp. PIV-1 Piv1 [OW011623]
3803914
3803998
+
Leu
TAG
-
¡û
>C10113215
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2412618
2412534
-
Leu
TAG
[Ensembl]
¡û
>WENV11100542
AERA01020916
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
61
145
+
Leu
TAG
[ENA]
¡û
>W1511398294
JTDM01000017
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
110096
110012
-
Leu
TAG
[ENA]
¡û
>W1511581011
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
12445
12361
-
Leu
TAG
[ENA]
¡û
>W1511686471
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2685138
2685222
+
Leu
TAG
[ENA]
¡û
>C161075094
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
1056733
1056817
+
Leu
TAG
[Ensembl]
¡û
>C161095089
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
2151124
2151208
+
Leu
TAG
-
¡û
>W1610071708
BCUG01000033
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
14714
14630
-
Leu
TAG
[ENA]
¡û
>W1710068910
BCUG01000033
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
14714
14630
-
Leu
TAG
[ENA]
¡û
>W1710539462
FNVJ01000015
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
1197
1281
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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