This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113807 (110 seq.)
>W1710882890
LMVE01000048
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
25412
25330
-
Leu
GAG
[ENA]
¡û
>W131058360
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
76848
76766
-
Leu
GAG
[ENA]
¡û
>W1711081234
LSSA01000144
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
20732
20814
+
Leu
GAG
[ENA]
¡û
>W1711116531
LUBZ01000013
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
31609
31527
-
Leu
GAG
[ENA]
¡û
>W1711229702
LXYR01000024
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
30951
30869
-
Leu
GAG
[ENA]
¡û
>W1711261774
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2655594
2655676
+
Leu
GAG
[ENA]
¡û
>W1711283624
LZQD01000009
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
84739
84821
+
Leu
GAG
[ENA]
¡û
>W1711335585
MBQX01000047
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
25604
25522
-
Leu
GAG
[ENA]
¡û
>W1711335615
MBQY01000016
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
169208
169126
-
Leu
GAG
[ENA]
¡û
>W1711335753
MBRD01000006
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
56347
56427
+
Leu
GAG
[ENA]
¡û
>W1711335814
MBRE01000037
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
102704
102784
+
Leu
GAG
[ENA]
¡û
>W1711629772
MPPI01000005
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
66091
66173
+
Leu
GAG
[ENA]
¡û
>W1711711292
MTAV01000002
Cyanobacteriota
Nostoc sp. T09 [MTAV]
187880
187798
-
Leu
GAG
[ENA]
¡û
>W1711711402
MTAW01000185
Cyanobacteriota
Nostoc sp. 106C [MTAW]
88336
88418
+
Leu
GAG
[ENA]
¡û
>W1711711466
MTAX01000120
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
189538
189456
-
Leu
GAG
[ENA]
¡û
>C171000007
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
835343
835423
+
Leu
GAG
-
¡û
>C171000070
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
835343
835423
+
Leu
GAG
-
¡û
>W131036306
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
5287127
5287047
-
Leu
GAG
[ENA]
¡û
>W131089964
AOFE01000011
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
18575
18655
+
Leu
GAG
[ENA]
¡û
>C001242
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
649992
649912
-
Leu
GAG
[Ensembl]
¡û
>C015306
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
1092359
1092279
-
Leu
GAG
[Ensembl]
¡û
>w021683
AAVW01000002
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
22365
22282
-
Leu
GAG
[ENA]
¡û
>W141004302
AFXD01000049
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
49791
49873
+
Leu
GAG
[ENA]
¡û
>W141022935
AJWF01000012
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
293740
293658
-
Leu
GAG
[ENA]
¡û
>WENV181841066
OGVQ01000087
[OGVQ] freshwater metagenome; freshwater
21017
21099
+
Leu
GAG
[ENA]
¢þ
>WENV181855356
OGWL01010328
[OGWL] freshwater metagenome; freshwater
292
374
+
Leu
GAG
[ENA]
¢þ
>WENV171003382
NNBT01008057
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
696
614
-
Leu
GAG
[ENA]
¢þ
>WENV171003435
NNBU01000020
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
11874
11792
-
Leu
GAG
[ENA]
¢þ
>WENV171003698
NNBV01000345
[NNBV] plant metagenome; symbiotic tissue sample KVS11
3268
3186
-
Leu
GAG
[ENA]
¢þ
>C181004768
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
7187746
7187664
-
Leu
GAG
-
¡û
>C181004832
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
6097477
6097397
-
Leu
GAG
-
¡û
>C181043611
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
175104
175184
+
Leu
GAG
-
¡û
>C181105225
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2692247
2692329
+
Leu
GAG
-
¡û
>C181137799
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
1892604
1892686
+
Leu
GAG
-
¡û
>C191001279
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
5636651
5636571
-
Leu
GAG
-
¡û
>W09101160
AAEA01000011
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
30768
30850
+
Leu
GAG
[ENA]
¡û
>W09113148
ABYK01000003
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
135189
135271
+
Leu
GAG
[ENA]
¡û
>W09125743
ACIR01000001
Cyanobacteriota
Trichormus azollae 708 [ACIR]
10194
10112
-
Leu
GAG
[ENA]
¡û
>W1910008408
BDGE01000059
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
110393
110313
-
Leu
GAG
[ENA]
¡û
>W1910175505
BJCE01000058
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
2115
2197
+
Leu
GAG
[ENA]
¡û
>W1910596219
LAGX01000051
Cyanobacteriota
Nostoc linckia z1 [LAGX]
61423
61503
+
Leu
GAG
[ENA]
¡û
>W1910596281
LAGY01000051
Cyanobacteriota
Nostoc linckia z2 [LAGY]
61613
61693
+
Leu
GAG
[ENA]
¡û
>W1910596383
LAGZ01000046
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
61580
61660
+
Leu
GAG
[ENA]
¡û
>W1910596457
LAHA01000026
Cyanobacteriota
Nostoc linckia z4 [LAHA]
96306
96226
-
Leu
GAG
[ENA]
¡û
>W1910596572
LAHB01000079
Cyanobacteriota
Nostoc linckia z6 [LAHB]
3626
3546
-
Leu
GAG
[ENA]
¡û
>W1910596616
LAHC01000041
Cyanobacteriota
Nostoc linckia z7 [LAHC]
61851
61931
+
Leu
GAG
[ENA]
¡û
>W1910596734
LAHD01000138
Cyanobacteriota
Nostoc linckia z8 [LAHD]
61554
61634
+
Leu
GAG
[ENA]
¡û
>W1910596814
LAHE01000064
Cyanobacteriota
Nostoc linckia z9 [LAHE]
3585
3505
-
Leu
GAG
[ENA]
¡û
>W1910596899
LAHF01000163
Cyanobacteriota
Nostoc linckia z13 [LAHF]
14275
14355
+
Leu
GAG
[ENA]
¡û
>W1910596982
LAHG01000075
Cyanobacteriota
Nostoc linckia z14 [LAHG]
30678
30758
+
Leu
GAG
[ENA]
¡û
>W1910597067
LAHH01000167
Cyanobacteriota
Nostoc linckia z15 [LAHH]
3588
3508
-
Leu
GAG
[ENA]
¡û
>W1910597157
LAHI01000138
Cyanobacteriota
Nostoc linckia z16 [LAHI]
3622
3542
-
Leu
GAG
[ENA]
¡û
>W1910597246
LAHJ01000096
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
61482
61562
+
Leu
GAG
[ENA]
¡û
>W1910613513
LGSU01000672
Cyanobacteriota
Hydrocoleum sp. CS-953 [LGSU]
2177
2257
+
Leu
GAG
[ENA]
¡û
>W1910792674
MRBZ01000034
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
32193
32113
-
Leu
GAG
[ENA]
¡û
>W1910805276
MTPU01000051
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
58775
58857
+
Leu
GAG
[ENA]
¡û
>W1910859298
NBYN01000074
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
139664
139746
+
Leu
GAG
[ENA]
¡û
>W1910909815
NGZU01000054
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
27704
27786
+
Leu
GAG
[ENA]
¡û
>W1910943159
NJHS01000004
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
25602
25520
-
Leu
GAG
[ENA]
¡û
>W1910943202
NJHT01000006
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
168212
168294
+
Leu
GAG
[ENA]
¡û
>W1910943243
NJHU01000013
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
168195
168277
+
Leu
GAG
[ENA]
¡û
>W1910943278
NJHV01000023
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
18357
18275
-
Leu
GAG
[ENA]
¡û
>W1910943327
NJHW01000034
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
25400
25318
-
Leu
GAG
[ENA]
¡û
>W1910943363
NJHX01000025
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
51793
51875
+
Leu
GAG
[ENA]
¡û
>W1910943398
NJHY01000001
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
175342
175424
+
Leu
GAG
[ENA]
¡û
>W1910943439
NJHZ01000004
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
174939
175021
+
Leu
GAG
[ENA]
¡û
>W1910943511
NJIA01000279
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
25391
25309
-
Leu
GAG
[ENA]
¡û
>W1911070779
NMQD01000131
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
970
1052
+
Leu
GAG
[ENA]
¡û
>W1911118751
NOLJ01000005
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
110519
110437
-
Leu
GAG
[ENA]
¡û
>W1911153655
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
2326058
2326140
+
Leu
GAG
[ENA]
¡û
>W1911153695
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
2570832
2570914
+
Leu
GAG
[ENA]
¡û
>W1911178217
NQMD01000092
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
8683
8765
+
Leu
GAG
[ENA]
¡û
>W1911244263
NSHF01000092
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
6817
6899
+
Leu
GAG
[ENA]
¡û
>W1911244264
NSHF01000092
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
7464
7546
+
Leu
GAG
[ENA]
¡û
>W1810355668
PVMC01000057
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
64799
64717
-
Leu
GAG
[ENA]
¡û
>W1810366245
PVWG01000005
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
66053
66135
+
Leu
GAG
[ENA]
¡û
>W10106010
ACYA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
182766
182848
+
Leu
GAG
[ENA]
¡û
>W10106080
ACYB01000042
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
87367
87449
+
Leu
GAG
[ENA]
¡û
>W10128292
CACA01000310
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
10272
10352
+
Leu
GAG
[ENA]
¡û
>W11108333
ACYA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
182766
182848
+
Leu
GAG
[ENA]
¡û
>W11108403
ACYB01000042
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
87367
87449
+
Leu
GAG
[ENA]
¡û
>C11115568
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
45663
45581
-
Leu
GAG
[Ensembl]
¡û
>W1511582893
LATL02000060
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
11791
11711
-
Leu
GAG
[ENA]
¡û
>W1511582909
LATL02000199
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
9055
8975
-
Leu
GAG
[ENA]
¡û
>W11185262
CACA01000310
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
10272
10352
+
Leu
GAG
[ENA]
¡û
>C161002515
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
6050363
6050443
+
Leu
GAG
[Ensembl]
¡û
>C161002675
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
3213510
3213590
+
Leu
GAG
[Ensembl]
¡û
>C161005322
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
392444
392524
+
Leu
GAG
[Ensembl]
¡û
>C161038914
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
7058100
7058020
-
Leu
GAG
[Ensembl]
¡û
>W1610003581
AGCR01000119
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
46934
47016
+
Leu
GAG
[ENA]
¡û
>W1610057130
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
1786765
1786685
-
Leu
GAG
[ENA]
¡û
>W1610084865
CDHJ01000119
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
15408
15488
+
Leu
GAG
[ENA]
¡û
>C131004923
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
6280535
6280453
-
Leu
GAG
[Ensembl]
¡û
>C131005097
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
494628
494546
-
Leu
GAG
[Ensembl]
¡û
>C131010291
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
2384796
2384878
+
Leu
GAG
[Ensembl]
¡û
>C131004506
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
646490
646570
+
Leu
GAG
[Ensembl]
¡û
>C131004198
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1866293
1866213
-
Leu
GAG
[Ensembl]
¡û
>W1610656785
LJOR01000014
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
51323
51241
-
Leu
GAG
[ENA]
¡û
>W1610744816
LMVE01000048
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
25412
25330
-
Leu
GAG
[ENA]
¡û
>W1610927773
LUBZ01000013
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
31609
31527
-
Leu
GAG
[ENA]
¡û
>W1610931008
LUFH01000268
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
10
92
+
Leu
GAG
[ENA]
¡û
>W1610979408
LWAJ01000259
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
1759
1840
+
Leu
GAG
[ENA]
¡û
>W1611013572
LXYR01000024
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
30951
30869
-
Leu
GAG
[ENA]
¡û
>W1611023749
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2655594
2655676
+
Leu
GAG
[ENA]
¡û
>W1611066460
MBRD01000006
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
56347
56427
+
Leu
GAG
[ENA]
¡û
>W1611066521
MBRE01000037
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
102704
102784
+
Leu
GAG
[ENA]
¡û
>W1710004201
AGCR01000119
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
46934
47016
+
Leu
GAG
[ENA]
¡û
>W1710053829
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
1786765
1786685
-
Leu
GAG
[ENA]
¡û
>W1710087985
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
4708119
4708039
-
Leu
GAG
[ENA]
¡û
>W1710089727
CDHJ01000119
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
15408
15488
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK