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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113872 (62 seq.)
>W1710996778
LQBR01000009
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1711029567
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1711047350
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
2388724
2388641
-
Tyr
GTA
[ENA]
¡û
>W1711268632
LZDE01000223
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
9041
9124
+
Tyr
GTA
[ENA]
¡û
>W1711678534
MRUG01000040
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
346727
346644
-
Tyr
GTA
[ENA]
¡û
>C171097773
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3567068
3566985
-
Tyr
GTA
-
¡û
>C171100126
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
4154819
4154902
+
Tyr
GTA
-
¡û
>C171103086
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
5238672
5238589
-
Tyr
GTA
-
¡û
>W131174996
ARIX01000006
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
1045
962
-
Tyr
GTA
[ENA]
¡û
>W131159080
AQUT01000006
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
192407
192324
-
Tyr
GTA
[ENA]
¡û
>W131164121
ARAH01000001
Gammaproteobacteria
Teredinibacter turnerae T7902 [ARAH]
156002
155919
-
Tyr
GTA
[ENA]
¡û
>W131166982
ARCX01000050
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
199754
199837
+
Tyr
GTA
[ENA]
¡û
>W131179293
ARMG01000026
Gammaproteobacteria
Teredinibacter turnerae T8402 [ARMG]
195034
194951
-
Tyr
GTA
[ENA]
¡û
>W131179332
ARMH01000056
Gammaproteobacteria
Teredinibacter turnerae T8412 [ARMH]
91680
91763
+
Tyr
GTA
[ENA]
¡û
>W131219180
ATYI01000012
Gammaproteobacteria
Teredinibacter turnerae T8415 [ATYI]
194975
194892
-
Tyr
GTA
[ENA]
¡û
>W131228582
AUGB01000002
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
192599
192516
-
Tyr
GTA
[ENA]
¡û
>W131230674
AUHU01000020
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
1775
1692
-
Tyr
GTA
[ENA]
¡û
>W131215016
ATUQ01000011
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
34276
34359
+
Tyr
GTA
[ENA]
¡û
>C020868
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
1183359
1183442
+
Tyr
GTA
[Ensembl]
¡û
>WENV181324801
OFLH01008661
[OFLH] marine metagenome; sea ice
598
515
-
Tyr
GTA
[ENA]
¢þ
>W141135601
AWEP01000009
Gammaproteobacteria
Marinimicrobium sp. LS-A18 [AWEP]
8497
8580
+
Tyr
GTA
[ENA]
¡û
>WENV182561147
OJDV01008846
[OJDV] seawater metagenome; Sea water
86
169
+
Tyr
GTA
[ENA]
¢þ
>WENV183616858
OOEE01004593
[OOEE] marine metagenome; sea ice
576
493
-
Tyr
GTA
[ENA]
¢þ
>WENV183617519
OOEG01004036
[OOEG] marine metagenome; sea ice
576
493
-
Tyr
GTA
[ENA]
¢þ
>WENV183621463
OOFU01001799
[OOFU] marine metagenome; sea ice
806
889
+
Tyr
GTA
[ENA]
¢þ
>WENV183623643
OOGA01024924
[OOGA] marine metagenome; sea ice
317
400
+
Tyr
GTA
[ENA]
¢þ
>WENV183624403
OOGD01006407
[OOGD] marine metagenome; sea ice
652
735
+
Tyr
GTA
[ENA]
¢þ
>WENV183624592
OOGD01056548
[OOGD] marine metagenome; sea ice
304
221
-
Tyr
GTA
[ENA]
¢þ
>WENV183624693
OOGE01001090
[OOGE] marine metagenome; sea ice
2072
2155
+
Tyr
GTA
[ENA]
¢þ
>WENV183630793
OOGU01002553
[OOGU] marine metagenome; sea ice
2445
2362
-
Tyr
GTA
[ENA]
¢þ
>WENV170151623
CEOD01013929
[CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
78
-
Tyr
GTA
[ENA]
¢þ
>W141425811
JELR01000005
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
270894
270977
+
Tyr
GTA
[ENA]
¡û
>WENV170538403
CEWR01077616
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4057
4140
+
Tyr
GTA
[ENA]
¢þ
>WENV170661192
JXWU01126620
[JXWU] soil metagenome; rice field; organic control Plot
197
114
-
Tyr
GTA
[ENA]
¢þ
>WENV170824835
MDSY01083157
[MDSY] marine metagenome; seawater
3973
4056
+
Tyr
GTA
[ENA]
¢þ
>WENV170896832
MDTD01101688
[MDTD] marine metagenome; seawater
124
41
-
Tyr
GTA
[ENA]
¢þ
>WENV170964169
MRWG01004316
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
721
638
-
Tyr
GTA
[ENA]
¢þ
>W09100589
AABI03000022
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
6093
6176
+
Tyr
GTA
[ENA]
¡û
>W141565061
JIBG01000008
Gammaproteobacteria
Teredinibacter turnerae 1133Y.S.0a.04 [JIBG]
201818
201901
+
Tyr
GTA
[ENA]
¡û
>W1910989448
NKQJ01000015
Gammaproteobacteria
Agaribacterium haliotis feces2 [NKQJ]
59284
59201
-
Tyr
GTA
[ENA]
¡û
>W1810270700
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
881236
881153
-
Tyr
GTA
[ENA]
¡û
>W1810604693
QGMQ01000012
Gammaproteobacteria
Marinimicrobium alkaliphilum SW121 [QGMQ]
75842
75759
-
Tyr
GTA
[ENA]
¡û
>C10113865
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
925518
925601
+
Tyr
GTA
[Ensembl]
¡û
>W1510865156
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4464046
4463963
-
Tyr
GTA
[ENA]
¡û
>W1511502013
JXCJ01000001
Gammaproteobacteria
Gilvimarinus agarilyticus JEA5 [JXCJ]
1147646
1147729
+
Tyr
GTA
[ENA]
¡û
>W1511573588
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
2465538
2465621
+
Tyr
GTA
[ENA]
¡û
>W1511573654
LANC01000013
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
195244
195161
-
Tyr
GTA
[ENA]
¡û
>W11150188
AEVK01000059
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
695
612
-
Tyr
GTA
[ENA]
¡û
>W1511681169
LFIJ01000003
Gammaproteobacteria
Gilvimarinus polysaccharolyticus YN3 [LFIJ]
125822
125739
-
Tyr
GTA
[ENA]
¡û
>W11170292
AFPJ01000004
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
134691
134774
+
Tyr
GTA
[ENA]
¡û
>C161078676
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
574651
574734
+
Tyr
GTA
[Ensembl]
¡û
>W1610610036
LFYV01000004
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
112502
112419
-
Tyr
GTA
[ENA]
¡û
>W1610610319
LGAK01000004
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
97760
97677
-
Tyr
GTA
[ENA]
¡û
>W1610851435
LQBR01000009
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1610877835
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1610888479
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
2388724
2388641
-
Tyr
GTA
[ENA]
¡û
>W1710520098
FNFH01000011
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
941
858
-
Tyr
GTA
[ENA]
¡û
>W1710557218
FOKT01000010
Gammaproteobacteria
Microbulbifer thermotolerans [FOKT]
10192
10275
+
Tyr
GTA
[ENA]
¡û
>W1710583732
FQVA01000008
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
10430
10513
+
Tyr
GTA
[ENA]
¡û
>W1710607816
FXAI01000007
Gammaproteobacteria
Alteromonadaceae bacterium Bs31 [FXAI]
232852
232769
-
Tyr
GTA
[ENA]
¡û
>W1710731381
LFYV01000004
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
112502
112419
-
Tyr
GTA
[ENA]
¡û
>W1710731825
LGAK01000004
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
97760
97677
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK