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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113978 (40 seq.)
>W131108937
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
171107
171021
-
Leu
CAG
[ENA]
¡û
>W131218318
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
364
278
-
Leu
CAG
[ENA]
¡û
>WENV180014024
FPIC01031225
[FPIC] soil metagenome; Soil
47342
47256
-
Leu
CAG
[ENA]
¢þ
>WENV181226051
OFDK01000009
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
4361
4447
+
Leu
CAG
[ENA]
¢þ
>WENV181285573
OFGS01002648
[OFGS] hot springs metagenome; Water and soil
715
801
+
Leu
CAG
[ENA]
¢þ
>C191131110
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1095455
1095541
+
Leu
CAG
-
¡û
>W09113805
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
237803
237889
+
Leu
CAG
[ENA]
¡û
>C09100860
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1599459
1599373
-
Leu
CAG
[Ensembl]
¡û
>W1911155365
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1779835
1779749
-
Leu
CAG
[ENA]
¡û
>W1911244057
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
937290
937204
-
Leu
CAG
[ENA]
¡û
>W1911244105
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1316777
1316691
-
Leu
CAG
[ENA]
¡û
>W1911244146
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1869742
1869656
-
Leu
CAG
[ENA]
¡û
>W1911244182
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1221400
1221486
+
Leu
CAG
[ENA]
¡û
>W1911572545
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1161195
1161281
+
Leu
CAG
[ENA]
¡û
>W1911572599
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2576117
2576031
-
Leu
CAG
[ENA]
¡û
>W1911572640
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1262561
1262647
+
Leu
CAG
[ENA]
¡û
>W1810052250
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
716609
716695
+
Leu
CAG
[ENA]
¡û
>W1810071898
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1205668
1205754
+
Leu
CAG
[ENA]
¡û
>W1810071947
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2223411
2223497
+
Leu
CAG
[ENA]
¡û
>W1810072001
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2502175
2502089
-
Leu
CAG
[ENA]
¡û
>W1810368026
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2365214
2365128
-
Leu
CAG
[ENA]
¡û
>C10103645
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1159376
1159462
+
Leu
CAG
[Ensembl]
¡û
>C11105215
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1254144
1254230
+
Leu
CAG
[Ensembl]
¡û
>C11105407
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1554392
1554306
-
Leu
CAG
[Ensembl]
¡û
>C11105440
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1369217
1369303
+
Leu
CAG
[Ensembl]
¡û
>C11105501
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
948208
948122
-
Leu
CAG
[Ensembl]
¡û
>W11139374
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
117539
117453
-
Leu
CAG
[ENA]
¡û
>W11139408
AEKC01000004
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
1042
1128
+
Leu
CAG
[ENA]
¡û
>W11139451
AEKD01000001
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
11202
11288
+
Leu
CAG
[ENA]
¡û
>W1511563975
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1767902
1767816
-
Leu
CAG
[ENA]
¡û
>W1511564011
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
484478
484392
-
Leu
CAG
[ENA]
¡û
>W1511564056
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1194249
1194335
+
Leu
CAG
[ENA]
¡û
>W1710603748
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1704274
1704360
+
Leu
CAG
[ENA]
¡û
>W1710603846
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
753006
752920
-
Leu
CAG
[ENA]
¡û
>W1710603933
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1699842
1699756
-
Leu
CAG
[ENA]
¡û
>W1710605096
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
764965
764879
-
Leu
CAG
[ENA]
¡û
>W1710609670
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1622917
1623003
+
Leu
CAG
[ENA]
¡û
>W1710609708
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1024068
1024154
+
Leu
CAG
[ENA]
¡û
>W1710609777
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1871397
1871311
-
Leu
CAG
[ENA]
¡û
>W1710609823
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1863939
1863853
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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