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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114075 (5 seq.)
>WENV170782345
MAAC01009709
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
127991
128075
+
Tyr
GTA
[ENA]
¡û
>W2012098813
VNWM01000001
Alphaproteobacteria
Sneathiella aquimaris 216LB-ZA1-12 [VNWM]
801
717
-
Tyr
GTA
[ENA]
¡û
>W2012098851
VNWN01000002
Alphaproteobacteria
Sneathiella chinensis LMG23452 [VNWN]
1373585
1373669
+
Tyr
GTA
[ENA]
¡û
>C231543111
CP112881
Alphaproteobacteria
Sneathiella aquimaris 216LB-ZA1-12 [CP112881]
2831434
2831350
-
Tyr
GTA
-
¡û
>W2310023900
BSNF01000001
Alphaproteobacteria
Sneathiella chinensis NBRC 103408 [BSNF]
1377695
1377779
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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