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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114298 (52 seq.)
>W1711073729
LSIW01000060
Bacillota
Streptococcus sp. CCH5-D3 [LSIW]
148736
148820
+
Leu
CAG
[ENA]
¡û
>W1711343064
MCHV01000053
Bacillota
Streptococcus thermophilus [MCHV]
5516
5600
+
Leu
CAG
[ENA]
¡û
>C171100993
CP019935
Bacillota
Streptococcus thermophilus APC151 [CP019935]
846529
846613
+
Leu
CAG
-
¡û
>C024518
CP000024
Bacillota
Streptococcus thermophilus CNRZ1066 [CP000024]
1605810
1605892
+
Leu
CAG
[Ensembl]
¡û
>WENV180163850
OAVI01001880
[OAVI] human gut metagenome; faeces
3232
3148
-
Leu
CAG
[ENA]
¢þ
>WENV180200257
OBAE01019089
[OBAE] human gut metagenome; human gut
606
690
+
Leu
CAG
[ENA]
¢þ
>WENV180239620
OBDB01019954
[OBDB] human gut metagenome; human gut
655
739
+
Leu
CAG
[ENA]
¢þ
>WENV180303085
OBJF01012623
[OBJF] human gut metagenome; feces
1991
2075
+
Leu
CAG
[ENA]
¢þ
>WENV180314515
OBKG01004518
[OBKG] human gut metagenome; human gut
161
245
+
Leu
CAG
[ENA]
¢þ
>WENV180446155
OBXB01000892
[OBXB] human gut metagenome; faeces
2536
2452
-
Leu
CAG
[ENA]
¢þ
>WENV180462741
OBYB01048402
[OBYB] human gut metagenome; faeces
276
360
+
Leu
CAG
[ENA]
¢þ
>WENV180499995
OCAI01001126
[OCAI] human gut metagenome; faeces
10311
10395
+
Leu
CAG
[ENA]
¢þ
>WENV180619185
OCQB01001882
[OCQB] human gut metagenome; human gut
10099
10183
+
Leu
CAG
[ENA]
¢þ
>WENV180646425
OCSH01001740
[OCSH] human gut metagenome; human gut
9605
9689
+
Leu
CAG
[ENA]
¢þ
>W141146718
AWVZ01000013
Bacillota
Streptococcus thermophilus DGCC7710 [AWVZ]
14623
14707
+
Leu
CAG
[ENA]
¡û
>WENV181559648
OGIZ01012208
[OGIZ] metagenome; Human gut stool
794
710
-
Leu
CAG
[ENA]
¢þ
>WENV181710777
OGPO01001424
[OGPO] human gut metagenome; faeces
10098
10182
+
Leu
CAG
[ENA]
¢þ
>WENV181718964
OGPT01100791
[OGPT] human gut metagenome; faeces
144
228
+
Leu
CAG
[ENA]
¢þ
>WENV181720397
OGPU01012105
[OGPU] human gut metagenome; faeces
676
592
-
Leu
CAG
[ENA]
¢þ
>WENV181733344
OGQE01002012
[OGQE] human gut metagenome; faeces
6458
6374
-
Leu
CAG
[ENA]
¢þ
>WENV181743221
OGQL01004189
[OGQL] human gut metagenome; faeces
816
732
-
Leu
CAG
[ENA]
¢þ
>WENV181762085
OGQW01029641
[OGQW] human gut metagenome; faeces
971
887
-
Leu
CAG
[ENA]
¢þ
>W141204831
AZJS01000043
Bacillota
Streptococcus thermophilus MTH17CL396 [AZJS]
10651
10735
+
Leu
CAG
[ENA]
¡û
>W141214969
AZTL01000043
Bacillota
Streptococcus thermophilus TH982 [AZTL]
11196
11280
+
Leu
CAG
[ENA]
¡û
>WENV182275880
OHUN01018380
[OHUN] human gut metagenome; feces
568
484
-
Leu
CAG
[ENA]
¢þ
>WENV182325906
OHYU01000726
[OHYU] human gut metagenome; feces
10078
10162
+
Leu
CAG
[ENA]
¢þ
>WENV182348893
OIBA01000520
[OIBA] human gut metagenome; feces
10099
10183
+
Leu
CAG
[ENA]
¢þ
>WENV182422383
OIGV01004533
[OIGV] human gut metagenome; human gut
868
952
+
Leu
CAG
[ENA]
¢þ
>WENV182503324
OIUO01001898
[OIUO] human gut metagenome; human gut
1861
1945
+
Leu
CAG
[ENA]
¢þ
>WENV182506399
OIVA01004415
[OIVA] human gut metagenome; human gut
1314
1398
+
Leu
CAG
[ENA]
¢þ
>WENV182617035
OJKC01099571
[OJKC] metagenome; faeces
610
526
-
Leu
CAG
[ENA]
¢þ
>WENV182872387
OKRV01005002
[OKRV] human gut metagenome; faeces
4749
4833
+
Leu
CAG
[ENA]
¢þ
>WENV182898009
OKSP01035005
[OKSP] human gut metagenome; feces
475
391
-
Leu
CAG
[ENA]
¢þ
>WENV182925691
OKUL01000702
[OKUL] human gut metagenome; feces
10100
10184
+
Leu
CAG
[ENA]
¢þ
>WENV182933965
OKUW01012786
[OKUW] human gut metagenome; feces
144
60
-
Leu
CAG
[ENA]
¢þ
>WENV182961883
OKWL01001661
[OKWL] human gut metagenome; stool
1208
1124
-
Leu
CAG
[ENA]
¢þ
>WENV183095541
OLND01002698
[OLND] human gut metagenome; faeces
10099
10183
+
Leu
CAG
[ENA]
¢þ
>WENV183136393
OLOF01001856
[OLOF] human gut metagenome; faeces
2728
2812
+
Leu
CAG
[ENA]
¢þ
>WENV183256891
OLRL01000837
[OLRL] human gut metagenome; faeces
5261
5177
-
Leu
CAG
[ENA]
¢þ
>WENV183301833
OLSP01002349
[OLSP] human gut metagenome; faeces
10099
10183
+
Leu
CAG
[ENA]
¢þ
>WENV183317435
OLVT01004754
[OLVT] human gut metagenome; faeces
5385
5469
+
Leu
CAG
[ENA]
¢þ
>WENV183491509
OMGG01021007
[OMGG] human gut metagenome; human gut
111
27
-
Leu
CAG
[ENA]
¢þ
>WENV183758734
PPYE01188878
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
4594
4678
+
Leu
CAG
[ENA]
¢þ
>WENV183770390
PPYE01433895
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
8892
8976
+
Leu
CAG
[ENA]
¢þ
>C181116499
CP025399
Bacillota
Streptococcus thermophilus GABA [CP025399]
1663062
1663146
+
Leu
CAG
-
¡û
>C181207155
LS483339
Bacillota
Streptococcus thermophilus NCTC12958 [LS483339]
1892792
1892876
+
Leu
CAG
-
¡û
>C191203717
LR134275
Bacillota
Streptococcus vestibularis NCTC12167 [LR134275]
1747955
1748039
+
Leu
CAG
-
¡û
>W1910923176
NIGT01000024
Bacillota
Streptococcus thermophilus LMG S-29186 [NIGT]
5302
5218
-
Leu
CAG
[ENA]
¡û
>W1810109595
PHHJ01000034
Bacillota
Streptococcus thermophilus St-5 [PHHJ]
10563
10647
+
Leu
CAG
[ENA]
¡û
>W1810109628
PHHK01000030
Bacillota
Streptococcus thermophilus St-2 [PHHK]
10421
10505
+
Leu
CAG
[ENA]
¡û
>C11122086
FR875178
Bacillota
Streptococcus thermophilus JIM 8232 [FR875178]
1722577
1722661
+
Leu
CAG
[Ensembl]
¡û
>W1610913034
LSIW01000060
Bacillota
Streptococcus sp. CCH5-D3 [LSIW]
148736
148820
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK