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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114616 (77 seq.)
>W1710785385
LJHU01000111
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
793
710
-
Tyr
GTA
[ENA]
¡û
>W1710863886
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
271508
271425
-
Tyr
GTA
[ENA]
¡û
>W1710865557
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
48973
49056
+
Tyr
GTA
[ENA]
¡û
>W1710873856
LMNC01000007
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
401
318
-
Tyr
GTA
[ENA]
¡û
>W1710876106
LMOY01000009
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
347795
347878
+
Tyr
GTA
[ENA]
¡û
>W1710877324
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
392
309
-
Tyr
GTA
[ENA]
¡û
>W1711073756
LSIX01000046
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
4937
4854
-
Tyr
GTA
[ENA]
¡û
>W1711407966
MGLI01000172
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
1481
1398
-
Tyr
GTA
[ENA]
¡û
>W1711407989
MGLM01000855
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
511
594
+
Tyr
GTA
[ENA]
¡û
>W131221568
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
361868
361785
-
Tyr
GTA
[ENA]
¡û
>C171094866
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2544468
2544385
-
Tyr
GTA
-
¡û
>W131052440
AMYY01000037
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
27586
27669
+
Tyr
GTA
[ENA]
¡û
>W131160346
AQWM01000023
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
61668
61751
+
Tyr
GTA
[ENA]
¡û
>WENV180016582
FSVH01000337
[FSVH] metagenome; soil
98
15
-
Tyr
GTA
[ENA]
¢þ
>WENV180020430
FTCZ01003651
[FTCZ] metagenome; soil
20886
20969
+
Tyr
GTA
[ENA]
¢þ
>WENV180020817
FTDB01002303
[FTDB] metagenome; soil
496
413
-
Tyr
GTA
[ENA]
¢þ
>WENV180027905
FTIZ01238336
[FTIZ] metagenome; soil
326
409
+
Tyr
GTA
[ENA]
¢þ
>WENV180028118
FTIZ01751883
[FTIZ] metagenome; soil
11330
11413
+
Tyr
GTA
[ENA]
¢þ
>WENV180028794
FTJH01000605
[FTJH] metagenome; soil
1377
1460
+
Tyr
GTA
[ENA]
¢þ
>WENV180029303
FTJI01492636
[FTJI] metagenome; soil
411
328
-
Tyr
GTA
[ENA]
¢þ
>WENV180034831
FTKR01523946
[FTKR] metagenome; soil
411
328
-
Tyr
GTA
[ENA]
¢þ
>WENV181170452
OEIV010047907
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
960
1043
+
Tyr
GTA
[ENA]
¢þ
>WENV181192190
OEPS010460265
[OEPS] soil metagenome; soil
39
122
+
Tyr
GTA
[ENA]
¢þ
>WENV181223248
OFDC01004064
[OFDC] hot springs metagenome; Water
343
260
-
Tyr
GTA
[ENA]
¢þ
>WENV181227159
OFDN01002528
[OFDN] hot springs metagenome; Water
343
260
-
Tyr
GTA
[ENA]
¢þ
>WENV181385065
OFRI01030595
[OFRI] wastewater metagenome; Exp Tend VB 90WW
650
733
+
Tyr
GTA
[ENA]
¢þ
>W141136695
AWGB01000034
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
61388
61471
+
Tyr
GTA
[ENA]
¡û
>W141136748
AWGC01000056
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
1294
1377
+
Tyr
GTA
[ENA]
¡û
>W141136783
AWGD01000023
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
58071
57988
-
Tyr
GTA
[ENA]
¡û
>W141136826
AWGE01000011
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
95385
95468
+
Tyr
GTA
[ENA]
¡û
>W141136861
AWGF01000013
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
173024
173107
+
Tyr
GTA
[ENA]
¡û
>W08010843
ABRU01000049
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
13865
13785
-
Tyr
GTA
[ENA]
¡û
>WENV183697023
OUNJ010000699
[OUNJ] metagenome; soil
6431
6514
+
Tyr
GTA
[ENA]
¢þ
>WENV183697314
OUNJ010342195
[OUNJ] metagenome; soil
370
287
-
Tyr
GTA
[ENA]
¢þ
>WENV183728304
PJTQ01000012
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
475390
475473
+
Tyr
GTA
[ENA]
¢þ
>WENV183739774
PJUF01000008
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
475390
475473
+
Tyr
GTA
[ENA]
¢þ
>WENV170594292
FUFK011265312
[FUFK] metagenome; unknown
316
233
-
Tyr
GTA
[ENA]
¢þ
>WENV170594363
FUFK011288383
[FUFK] metagenome; unknown
473
390
-
Tyr
GTA
[ENA]
¢þ
>WENV170658940
JUGB01000738
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
784
867
+
Tyr
GTA
[ENA]
¢þ
>WENV170713883
LNFM01045514
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2775
2858
+
Tyr
GTA
[ENA]
¢þ
>WENV170784068
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
363714
363631
-
Tyr
GTA
[ENA]
¢þ
>WENV170834491
MDSZ01097914
[MDSZ] marine metagenome; seawater
883
800
-
Tyr
GTA
[ENA]
¢þ
>C181056265
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
261782
261699
-
Tyr
GTA
-
¡û
>C181180036
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
2570597
2570680
+
Tyr
GTA
-
¡û
>C191166121
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2297049
2296966
-
Tyr
GTA
-
¡û
>C191189133
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2241707
2241624
-
Tyr
GTA
-
¡û
>W141712463
JMQR01000161
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
5195
5278
+
Tyr
GTA
[ENA]
¡û
>W141731246
JNIX01000016
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
1287
1204
-
Tyr
GTA
[ENA]
¡û
>W141807528
JPOM01000001
Alphaproteobacteria
Caulobacteraceae bacterium PMMR1 [JPOM]
732479
732396
-
Tyr
GTA
[ENA]
¡û
>W1910725239
MGLJ01000605
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
4407
4490
+
Tyr
GTA
[ENA]
¡û
>W1911566766
PCPB01000025
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
393
310
-
Tyr
GTA
[ENA]
¡û
>W1911566970
PCPF01000022
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
61190
61273
+
Tyr
GTA
[ENA]
¡û
>W1911567210
PCPK01000019
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
61254
61337
+
Tyr
GTA
[ENA]
¡û
>W1911567298
PCPM01000013
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
16243
16326
+
Tyr
GTA
[ENA]
¡û
>W1911567417
PCPO01000048
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
16231
16314
+
Tyr
GTA
[ENA]
¡û
>W1911738134
QUOQ01000002
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
640570
640653
+
Tyr
GTA
[ENA]
¡û
>W1810693171
QLLC01000020
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
369
286
-
Tyr
GTA
[ENA]
¡û
>W10109867
ADBM01000021
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
49037
49120
+
Tyr
GTA
[ENA]
¡û
>C10102193
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1558730
1558813
+
Tyr
GTA
[Ensembl]
¡û
>W11112304
ADBM01000021
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
49037
49120
+
Tyr
GTA
[ENA]
¡û
>W11123407
ADUH01000293
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
52307
52390
+
Tyr
GTA
[ENA]
¡û
>W1511489485
JWSY01000026
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
323
240
-
Tyr
GTA
[ENA]
¡û
>W1511547873
JZRG01000009
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
327
244
-
Tyr
GTA
[ENA]
¡û
>C161047055
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2860064
2859981
-
Tyr
GTA
[Ensembl]
¡û
>C161089093
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
813585
813668
+
Tyr
GTA
[Ensembl]
¡û
>W1610074218
BCWM01000007
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
303
220
-
Tyr
GTA
[ENA]
¡û
>W1610649191
LJHU01000111
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
793
710
-
Tyr
GTA
[ENA]
¡û
>W1610726232
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
271508
271425
-
Tyr
GTA
[ENA]
¡û
>W1610727903
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
48973
49056
+
Tyr
GTA
[ENA]
¡û
>W1610736202
LMNC01000007
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
401
318
-
Tyr
GTA
[ENA]
¡û
>W1610738452
LMOY01000009
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
347795
347878
+
Tyr
GTA
[ENA]
¡û
>W1610739670
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
392
309
-
Tyr
GTA
[ENA]
¡û
>W1610913061
LSIX01000046
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
4937
4854
-
Tyr
GTA
[ENA]
¡û
>W1710071336
BCWM01000007
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
303
220
-
Tyr
GTA
[ENA]
¡û
>W1710084611
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
594990
594907
-
Tyr
GTA
[ENA]
¡û
>W1710505476
FMTS01000003
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
434689
434772
+
Tyr
GTA
[ENA]
¡û
>W1710527011
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
230386
230469
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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