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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114639 (42 seq.)
>W1711120912
LUHJ01000015
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
16757
16675
-
Leu
GAG
[ENA]
¡û
>W1711666634
MRCD01000031
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
41688
41768
+
Leu
GAG
[ENA]
¡û
>W1711666689
MRCE01000015
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
194432
194352
-
Leu
GAG
[ENA]
¡û
>W1711979768
NDGV01000047
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
1744
1664
-
Leu
GAG
[ENA]
¡û
>W131036276
ALVJ01000040
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
601014
600934
-
Leu
GAG
[ENA]
¡û
>C007374
CP000239
Cyanobacteriota
Synechococcus sp. JA-3-3Ab [CP000239]
1217328
1217408
+
Leu
GAG
[Ensembl]
¡û
>WENV180014606
FQKF010064883
[FQKF] soil metagenome; Soil
82
2
-
Leu
GAG
[ENA]
¢þ
>WENV180037396
FVAA010997390
[FVAA] soil metagenome; Soil
84
4
-
Leu
GAG
[ENA]
¢þ
>W141021270
AJLJ01000223
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
1809
1891
+
Leu
GAG
[ENA]
¡û
>W141021369
AJLL01000090
Cyanobacteriota
Fischerella thermalis PCC 7521 [AJLL]
140030
139948
-
Leu
GAG
[ENA]
¡û
>W141038138
ALVI01000003
Cyanobacteriota
Kamptonema formosum PCC 6407 [ALVI]
106929
106849
-
Leu
GAG
[ENA]
¡û
>W141038367
ALVT01000002
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
215160
215078
-
Leu
GAG
[ENA]
¡û
>W141038491
ALVX01000012
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
321920
322002
+
Leu
GAG
[ENA]
¡û
>W141051320
AMZV01000034
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
34465
34385
-
Leu
GAG
[ENA]
¡û
>WENV170000540
AFSR01000140
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
19959
20040
+
Leu
GAG
[ENA]
¢þ
>WENV170000743
AFSR01002993
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
629
709
+
Leu
GAG
[ENA]
¢þ
>C181004905
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
1493271
1493189
-
Leu
GAG
-
¡û
>C181004931
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
10300401
10300481
+
Leu
GAG
-
¡û
>C181078440
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
3134595
3134513
-
Leu
GAG
-
¡û
>C181160832
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
986297
986377
+
Leu
GAG
-
¡û
>C181169660
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
2025837
2025919
+
Leu
GAG
-
¡û
>W141701098
JMKF01000072
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
205835
205753
-
Leu
GAG
[ENA]
¡û
>W1910002851
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
511204
511123
-
Leu
GAG
[ENA]
¡û
>W1910002876
AUNA01000001
Cyanobacteriota
Synechococcus sp. 63AY4M1 [AUNA]
3086903
3086822
-
Leu
GAG
[ENA]
¡û
>W1910005370
AXUV01000001
Cyanobacteriota
Synechococcus sp. 65AY640 [AXUV]
226143
226224
+
Leu
GAG
[ENA]
¡û
>W1910005442
AXUW01000001
Cyanobacteriota
Synechococcus sp. 65AY6A5 [AXUW]
1164539
1164458
-
Leu
GAG
[ENA]
¡û
>W1910005499
AXUX01000001
Cyanobacteriota
Synechococcus sp. 63AY4M2 [AXUX]
398621
398540
-
Leu
GAG
[ENA]
¡û
>W1910005526
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
2685975
2685894
-
Leu
GAG
[ENA]
¡û
>W1910909856
NGZV01000080
Cyanobacteriota
Fischerella thermalis WC157 [NGZV]
27552
27634
+
Leu
GAG
[ENA]
¡û
>W1910909927
NGZX01000075
Cyanobacteriota
Fischerella thermalis WC559 [NGZX]
35515
35597
+
Leu
GAG
[ENA]
¡û
>W1910910008
NGZZ01000071
Cyanobacteriota
Fischerella thermalis WC542 [NGZZ]
36732
36814
+
Leu
GAG
[ENA]
¡û
>W1910910190
NHAE01000024
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
71582
71664
+
Leu
GAG
[ENA]
¡û
>W1911070871
NMQF01000012
Cyanobacteriota
Fischerella thermalis CCMEE 5198 [NMQF]
9512
9594
+
Leu
GAG
[ENA]
¡û
>W1911638383
PVWM01000402
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
6073
5993
-
Leu
GAG
[ENA]
¡û
>W1911741979
QVFW01000003
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
405160
405240
+
Leu
GAG
[ENA]
¡û
>W1810185593
PKGD01000665
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
539
621
+
Leu
GAG
[ENA]
¡û
>W1810366211
PVWD01000431
Cyanobacteriota
filamentous cyanobacterium CCP2 [PVWD]
745
827
+
Leu
GAG
[ENA]
¡û
>WENV11100883
AFSR01000140
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
19959
20040
+
Leu
GAG
[ENA]
¡û
>WENV11101086
AFSR01002993
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
629
709
+
Leu
GAG
[ENA]
¡û
>C11122285
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
986297
986377
+
Leu
GAG
[Ensembl]
¡û
>W1610932106
LUHI01000006
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
16756
16674
-
Leu
GAG
[ENA]
¡û
>W1610932149
LUHJ01000015
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
16757
16675
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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