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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114922 (77 seq.)
>W131157116
AQQO01000356
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
51680
51764
+
Tyr
GTA
[ENA]
¡û
>W131157117
AQQO01000356
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
51825
51909
+
Tyr
GTA
[ENA]
¡û
>W131157118
AQQO01000356
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
51969
52053
+
Tyr
GTA
[ENA]
¡û
>W1711751048
MUNJ01000004
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
121635
121551
-
Tyr
GTA
[ENA]
¡û
>W1711751049
MUNJ01000004
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
121491
121407
-
Tyr
GTA
[ENA]
¡û
>W1711751109
MUNJ01000036
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
527
443
-
Tyr
GTA
[ENA]
¡û
>w027925
ABCQ01000018
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
63719
63805
+
Tyr
GTA
[ENA]
¡û
>w027924
ABCQ01000018
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
63497
63583
+
Tyr
GTA
[ENA]
¡û
>w027923
ABCQ01000018
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
63274
63360
+
Tyr
GTA
[ENA]
¡û
>WENV170657813
JTFP01022526
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1443
1527
+
Tyr
GTA
[ENA]
¡û
>W09122180
ACFZ01000006
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
164883
164967
+
Tyr
GTA
[ENA]
¡û
>W09122189
ACFZ01000007
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
19271
19187
-
Tyr
GTA
[ENA]
¡û
>C181160608
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
13608
13524
-
Tyr
GTA
-
¡û
>C181160609
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
13463
13379
-
Tyr
GTA
-
¡û
>C181160610
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
13319
13235
-
Tyr
GTA
-
¡û
>C191012990
CP016990
Gammaproteobacteria
Aeromonas hydrophila ZYAH75 [CP016990]
301122
301206
+
Tyr
GTA
-
¡û
>W1810422980
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
1586050
1586134
+
Tyr
GTA
[ENA]
¡û
>W1810422981
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
1586201
1586285
+
Tyr
GTA
[ENA]
¡û
>W1810422982
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
1586434
1586518
+
Tyr
GTA
[ENA]
¡û
>W2010290597
CABMOI010000010
Gammaproteobacteria
Enterobacterales bacterium [CABMOI]
2913
2997
+
Tyr
GTA
[ENA]
¡û
>W2010290598
CABMOI010000010
Gammaproteobacteria
Enterobacterales bacterium [CABMOI]
3058
3142
+
Tyr
GTA
[ENA]
¡û
>W2010290599
CABMOI010000010
Gammaproteobacteria
Enterobacterales bacterium [CABMOI]
3202
3286
+
Tyr
GTA
[ENA]
¡û
>W2010701525
JACHGR010000009
Gammaproteobacteria
Tolumonas osonensis DSM 22975 [JACHGR]
683
599
-
Tyr
GTA
[ENA]
¡û
>W2011762110
UATR01000010
Gammaproteobacteria
Plesiomonas shigelloides NCTC10364 [UATR]
2913
2997
+
Tyr
GTA
[ENA]
¡û
>W2011762111
UATR01000010
Gammaproteobacteria
Plesiomonas shigelloides NCTC10364 [UATR]
3058
3142
+
Tyr
GTA
[ENA]
¡û
>W2011762112
UATR01000010
Gammaproteobacteria
Plesiomonas shigelloides NCTC10364 [UATR]
3202
3286
+
Tyr
GTA
[ENA]
¡û
>W2011835533
UGTC01000001
Gammaproteobacteria
Plesiomonas shigelloides NCTC10363 [UGTC]
2399103
2399187
+
Tyr
GTA
[ENA]
¡û
>W2011835534
UGTC01000001
Gammaproteobacteria
Plesiomonas shigelloides NCTC10363 [UGTC]
2399247
2399331
+
Tyr
GTA
[ENA]
¡û
>W2011835535
UGTC01000001
Gammaproteobacteria
Plesiomonas shigelloides NCTC10363 [UGTC]
2399391
2399475
+
Tyr
GTA
[ENA]
¡û
>W2012309878
WEJX01000077
Gammaproteobacteria
Plesiomonas shigelloides G5889 [WEJX]
4856
4940
+
Tyr
GTA
[ENA]
¡û
>W2012309879
WEJX01000077
Gammaproteobacteria
Plesiomonas shigelloides G5889 [WEJX]
5001
5085
+
Tyr
GTA
[ENA]
¡û
>W2012310049
WEJZ01000065
Gammaproteobacteria
Plesiomonas shigelloides G5885 [WEJZ]
56770
56686
-
Tyr
GTA
[ENA]
¡û
>W2012310051
WEJZ01000066
Gammaproteobacteria
Plesiomonas shigelloides G5885 [WEJZ]
136
52
-
Tyr
GTA
[ENA]
¡û
>W2012310139
WEKA01000105
Gammaproteobacteria
Plesiomonas shigelloides G5882 [WEKA]
13953
14037
+
Tyr
GTA
[ENA]
¡û
>W2012310140
WEKA01000105
Gammaproteobacteria
Plesiomonas shigelloides G5882 [WEKA]
14098
14182
+
Tyr
GTA
[ENA]
¡û
>W2012310141
WEKA01000105
Gammaproteobacteria
Plesiomonas shigelloides G5882 [WEKA]
14242
14326
+
Tyr
GTA
[ENA]
¡û
>W2012310168
WEKB01000031
Gammaproteobacteria
Plesiomonas shigelloides G5881 [WEKB]
4849
4933
+
Tyr
GTA
[ENA]
¡û
>W2012310169
WEKB01000031
Gammaproteobacteria
Plesiomonas shigelloides G5881 [WEKB]
4994
5078
+
Tyr
GTA
[ENA]
¡û
>W2012310170
WEKB01000031
Gammaproteobacteria
Plesiomonas shigelloides G5881 [WEKB]
5138
5222
+
Tyr
GTA
[ENA]
¡û
>W2012310383
WEKD01000097
Gammaproteobacteria
Plesiomonas shigelloides G5879 [WEKD]
4850
4934
+
Tyr
GTA
[ENA]
¡û
>W2012310384
WEKD01000097
Gammaproteobacteria
Plesiomonas shigelloides G5879 [WEKD]
4995
5079
+
Tyr
GTA
[ENA]
¡û
>W2012310439
WEKE01000037
Gammaproteobacteria
Plesiomonas shigelloides G5877 [WEKE]
393181
393097
-
Tyr
GTA
[ENA]
¡û
>W2012310440
WEKE01000037
Gammaproteobacteria
Plesiomonas shigelloides G5877 [WEKE]
393036
392952
-
Tyr
GTA
[ENA]
¡û
>W2012310441
WEKE01000037
Gammaproteobacteria
Plesiomonas shigelloides G5877 [WEKE]
392892
392808
-
Tyr
GTA
[ENA]
¡û
>W2012310541
WEKF01000065
Gammaproteobacteria
Plesiomonas shigelloides G5270 [WEKF]
22722
22638
-
Tyr
GTA
[ENA]
¡û
>W2012310542
WEKF01000065
Gammaproteobacteria
Plesiomonas shigelloides G5270 [WEKF]
22577
22493
-
Tyr
GTA
[ENA]
¡û
>W2012310581
WEKG01000037
Gammaproteobacteria
Plesiomonas shigelloides G5263 [WEKG]
59
143
+
Tyr
GTA
[ENA]
¡û
>W2012310582
WEKG01000037
Gammaproteobacteria
Plesiomonas shigelloides G5263 [WEKG]
203
287
+
Tyr
GTA
[ENA]
¡û
>W2110005109
AAYRVH010000007
Gammaproteobacteria
Aeromonas hydrophila OTH-19-VL-SD-NC-0043 [AAYRVH]
210181
210265
+
Tyr
GTA
[ENA]
¡û
>W2110069928
BPFC01000159
Gammaproteobacteria
Shewanella glacialipiscicola T147 [BPFC]
300
384
+
Tyr
GTA
[ENA]
¡û
>W2110070109
BPFE01000114
Gammaproteobacteria
Shewanella morhuae ATCC BAA-1206 [BPFE]
7988
7904
-
Tyr
GTA
[ENA]
¡û
>W2110070110
BPFE01000114
Gammaproteobacteria
Shewanella morhuae ATCC BAA-1206 [BPFE]
7837
7753
-
Tyr
GTA
[ENA]
¡û
>W2110070111
BPFE01000114
Gammaproteobacteria
Shewanella morhuae ATCC BAA-1206 [BPFE]
7604
7520
-
Tyr
GTA
[ENA]
¡û
>W2110136794
JAACNG010000001
Gammaproteobacteria
Plesiomonas shigelloides GT4 [JAACNG]
136848
136932
+
Tyr
GTA
[ENA]
¡û
>W2110136795
JAACNG010000001
Gammaproteobacteria
Plesiomonas shigelloides GT4 [JAACNG]
136993
137077
+
Tyr
GTA
[ENA]
¡û
>W2110136796
JAACNG010000001
Gammaproteobacteria
Plesiomonas shigelloides GT4 [JAACNG]
137137
137221
+
Tyr
GTA
[ENA]
¡û
>W2110137382
JAADJL010000007
Gammaproteobacteria
Aeromonas hydrophila Aer_On19M [JAADJL]
210386
210470
+
Tyr
GTA
[ENA]
¡û
>W2110517787
JAFNAA010000002
Gammaproteobacteria
Plesiomonas shigelloides zfcc0051 [JAFNAA]
142646
142730
+
Tyr
GTA
[ENA]
¡û
>W2110517788
JAFNAA010000002
Gammaproteobacteria
Plesiomonas shigelloides zfcc0051 [JAFNAA]
142791
142875
+
Tyr
GTA
[ENA]
¡û
>W2110517789
JAFNAA010000002
Gammaproteobacteria
Plesiomonas shigelloides zfcc0051 [JAFNAA]
142935
143019
+
Tyr
GTA
[ENA]
¡û
>W2110517872
JAFNAA010000043
Gammaproteobacteria
Plesiomonas shigelloides zfcc0051 [JAFNAA]
531
447
-
Tyr
GTA
[ENA]
¡û
>C201074292
CP038513
Gammaproteobacteria
Aeromonas sp. 2692-1 [CP038513]
573709
573625
-
Tyr
GTA
-
¡û
>C211158729
CP062196
Gammaproteobacteria
Plesiomonas shigelloides P5462 [CP062196]
2381270
2381354
+
Tyr
GTA
-
¡û
>C211158730
CP062196
Gammaproteobacteria
Plesiomonas shigelloides P5462 [CP062196]
2381414
2381498
+
Tyr
GTA
-
¡û
>C231244863
CP087711
Gammaproteobacteria
Plesiomonas shigelloides 7A [CP087711, CP087712]
190639
190723
+
Tyr
GTA
-
¡û
>C231244864
CP087711
Gammaproteobacteria
Plesiomonas shigelloides 7A [CP087711, CP087712]
190784
190868
+
Tyr
GTA
-
¡û
>C231244865
CP087711
Gammaproteobacteria
Plesiomonas shigelloides 7A [CP087711, CP087712]
190928
191012
+
Tyr
GTA
-
¡û
>W2110800972
WSYM01000006
Gammaproteobacteria
Aeromonas hydrophila subsp. ranae Aer_On29M [WSYM]
21783
21699
-
Tyr
GTA
[ENA]
¡û
>W2130031369
JAFNAA010000198
Gammaproteobacteria
Plesiomonas shigelloides zfcc0051 [JAFNAA]
194
278
+
Tyr
GTA
[ENA]
¡û
>W1511478865
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
254548
254464
-
Tyr
GTA
[ENA]
¡û
>W1511478866
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
254403
254319
-
Tyr
GTA
[ENA]
¡û
>W1511478867
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
254259
254175
-
Tyr
GTA
[ENA]
¡û
>C161109342
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2314745
2314829
+
Tyr
GTA
[Ensembl]
¡û
>C161109343
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2314890
2314974
+
Tyr
GTA
[Ensembl]
¡û
>C161109344
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2315034
2315118
+
Tyr
GTA
[Ensembl]
¡û
>W1710597941
FTNN01000012
Gammaproteobacteria
Shewanella morhuae [FTNN]
26059
26143
+
Tyr
GTA
[ENA]
¡û
>W1710597943
FTNN01000012
Gammaproteobacteria
Shewanella morhuae [FTNN]
26443
26527
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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