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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115044 (120 seq.)
>C171129193
LT605205
Bacteroidota
Proteiniphilum saccharofermentans M3/6 [LT605205]
3679279
3679365
+
Tyr
GTA
-
¡û
>C171129220
LT605205
Bacteroidota
Proteiniphilum saccharofermentans M3/6 [LT605205]
867894
867811
-
Tyr
GTA
-
¡û
>C171129303
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
2933073
2933158
+
Tyr
GTA
-
¡û
>C171129318
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
1144119
1144036
-
Tyr
GTA
-
¡û
>WENV180005721
FLRW01261954
[FLRW] metagenome; saliva
1385
1468
+
Tyr
GTA
[ENA]
¢þ
>WENV180565262
OCLF01104343
[OCLF] human gut metagenome; human gut
141
58
-
Tyr
GTA
[ENA]
¢þ
>WENV180576827
OCLZ01114385
[OCLZ] human gut metagenome; human gut
98
14
-
Tyr
GTA
[ENA]
¢þ
>WENV180696562
ODCT01015387
[ODCT] human metagenome; G_DNA_Buccal mucosa
161
244
+
Tyr
GTA
[ENA]
¢þ
>WENV180708090
ODFJ01000265
[ODFJ] human metagenome; G_DNA_Tongue dorsum
2564
2647
+
Tyr
GTA
[ENA]
¢þ
>WENV180721164
ODGK01016050
[ODGK] human metagenome; G_DNA_Palatine Tonsils
257
174
-
Tyr
GTA
[ENA]
¢þ
>WENV180731662
ODGW01005339
[ODGW] human metagenome; G_DNA_Supragingival plaque
932
848
-
Tyr
GTA
[ENA]
¢þ
>WENV180731719
ODGW01008288
[ODGW] human metagenome; G_DNA_Supragingival plaque
393
310
-
Tyr
GTA
[ENA]
¢þ
>WENV180759185
ODHY01001762
[ODHY] human metagenome; G_DNA_Buccal mucosa
3296
3213
-
Tyr
GTA
[ENA]
¢þ
>WENV180759213
ODHY01002387
[ODHY] human metagenome; G_DNA_Buccal mucosa
2974
3057
+
Tyr
GTA
[ENA]
¢þ
>WENV180768379
ODIG01005885
[ODIG] human metagenome; G_DNA_Tongue dorsum
4806
4889
+
Tyr
GTA
[ENA]
¢þ
>WENV180773127
ODII01014311
[ODII] human metagenome; G_DNA_Buccal mucosa
94
177
+
Tyr
GTA
[ENA]
¢þ
>WENV180779924
ODIN01026857
[ODIN] human metagenome; G_DNA_Throat
114
197
+
Tyr
GTA
[ENA]
¢þ
>WENV180782142
ODIP01025664
[ODIP] human metagenome; G_DNA_Supragingival plaque
465
382
-
Tyr
GTA
[ENA]
¢þ
>WENV180794157
ODIY01027532
[ODIY] human metagenome; G_DNA_Buccal mucosa
199
116
-
Tyr
GTA
[ENA]
¢þ
>WENV180806866
ODJI01000073
[ODJI] human metagenome; G_DNA_Tongue dorsum
76422
76339
-
Tyr
GTA
[ENA]
¢þ
>WENV180832128
ODKC01000548
[ODKC] human metagenome; G_DNA_Supragingival plaque
4029
4112
+
Tyr
GTA
[ENA]
¢þ
>WENV180832281
ODKC01000950
[ODKC] human metagenome; G_DNA_Supragingival plaque
7987
8070
+
Tyr
GTA
[ENA]
¢þ
>WENV180832813
ODKC01004981
[ODKC] human metagenome; G_DNA_Supragingival plaque
1586
1669
+
Tyr
GTA
[ENA]
¢þ
>WENV180835054
ODKE01000461
[ODKE] human metagenome; G_DNA_Supragingival plaque
13203
13286
+
Tyr
GTA
[ENA]
¢þ
>WENV180843861
ODKN01014947
[ODKN] human metagenome; G_DNA_Supragingival plaque
1580
1663
+
Tyr
GTA
[ENA]
¢þ
>WENV180861038
ODLE01000592
[ODLE] human metagenome; G_DNA_Tongue dorsum
16974
17057
+
Tyr
GTA
[ENA]
¢þ
>WENV180878327
ODLV01040070
[ODLV] human metagenome; G_DNA_Tongue dorsum
418
335
-
Tyr
GTA
[ENA]
¢þ
>WENV180880631
ODLZ01038409
[ODLZ] human metagenome; G_DNA_Tongue dorsum
531
614
+
Tyr
GTA
[ENA]
¢þ
>WENV180881911
ODMB01000738
[ODMB] human metagenome; G_DNA_Buccal mucosa
4048
3965
-
Tyr
GTA
[ENA]
¢þ
>WENV180889532
ODMN01057189
[ODMN] human metagenome; G_DNA_Supragingival plaque
624
541
-
Tyr
GTA
[ENA]
¢þ
>WENV180933124
ODTQ01016334
[ODTQ] human metagenome; G_DNA_Buccal mucosa
228
311
+
Tyr
GTA
[ENA]
¢þ
>WENV180947484
ODUF01010998
[ODUF] human metagenome; G_DNA_Supragingival plaque
418
335
-
Tyr
GTA
[ENA]
¢þ
>WENV180959204
ODUM01000160
[ODUM] human metagenome; G_DNA_Tongue dorsum
20307
20390
+
Tyr
GTA
[ENA]
¢þ
>WENV180974686
ODUX01051408
[ODUX] human metagenome; G_DNA_Buccal mucosa
232
149
-
Tyr
GTA
[ENA]
¢þ
>WENV180977166
ODUZ01000038
[ODUZ] human metagenome; G_DNA_Tongue dorsum
13193
13276
+
Tyr
GTA
[ENA]
¢þ
>WENV180979747
ODVC01001313
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
3
86
+
Tyr
GTA
[ENA]
¢þ
>WENV180982169
ODVE01187144
[ODVE] human metagenome; G_DNA_Supragingival plaque
142
225
+
Tyr
GTA
[ENA]
¢þ
>WENV181008520
ODWE01006980
[ODWE] human metagenome; G_DNA_Supragingival plaque
3509
3592
+
Tyr
GTA
[ENA]
¢þ
>WENV181010881
ODWI01000655
[ODWI] human metagenome; G_DNA_Tongue dorsum
4560
4643
+
Tyr
GTA
[ENA]
¢þ
>WENV181016672
ODWR01004141
[ODWR] human metagenome; G_DNA_Tongue dorsum
4395
4478
+
Tyr
GTA
[ENA]
¢þ
>WENV181044316
ODXV01006219
[ODXV] human metagenome; G_DNA_Tongue dorsum
424
341
-
Tyr
GTA
[ENA]
¢þ
>WENV181050163
ODYD01007611
[ODYD] human metagenome; G_DNA_Supragingival plaque
3508
3591
+
Tyr
GTA
[ENA]
¢þ
>WENV181050220
ODYD01009128
[ODYD] human metagenome; G_DNA_Supragingival plaque
618
535
-
Tyr
GTA
[ENA]
¢þ
>WENV181050365
ODYD01015099
[ODYD] human metagenome; G_DNA_Supragingival plaque
186
103
-
Tyr
GTA
[ENA]
¢þ
>WENV181077570
OEAP01074914
[OEAP] human metagenome; G_DNA_Supragingival plaque
621
538
-
Tyr
GTA
[ENA]
¢þ
>WENV181086763
OEAY01002790
[OEAY] human metagenome; G_DNA_Tongue dorsum
4398
4481
+
Tyr
GTA
[ENA]
¢þ
>WENV181097143
OECA01002836
[OECA] human metagenome; G_DNA_Tongue dorsum
3242
3159
-
Tyr
GTA
[ENA]
¢þ
>WENV181103562
OECV01000227
[OECV] human metagenome; G_DNA_Throat
13284
13367
+
Tyr
GTA
[ENA]
¢þ
>WENV181106173
OEED01049771
[OEED] human metagenome; G_DNA_Tongue dorsum
172
255
+
Tyr
GTA
[ENA]
¢þ
>WENV181108612
OEEJ01000100
[OEEJ] human metagenome; G_DNA_Tongue dorsum
51081
50998
-
Tyr
GTA
[ENA]
¢þ
>WENV181150126
OEHW01000523
[OEHW] human metagenome; G_DNA_Tongue dorsum
13359
13442
+
Tyr
GTA
[ENA]
¢þ
>WENV181159708
OEIK01000014
[OEIK] human metagenome; G_DNA_Supragingival plaque
12448
12531
+
Tyr
GTA
[ENA]
¢þ
>WENV181176769
OEJR01039454
[OEJR] human metagenome; G_DNA_Saliva
404
321
-
Tyr
GTA
[ENA]
¢þ
>W141145622
AWUU01000030
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
13791
13874
+
Tyr
GTA
[ENA]
¡û
>W141145645
AWUU01000136
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
41148
41233
+
Tyr
GTA
[ENA]
¡û
>W141145734
AWUW01000138
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
14638
14723
+
Tyr
GTA
[ENA]
¡û
>W141146043
AWVE01000085
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
52145
52060
-
Tyr
GTA
[ENA]
¡û
>WENV181914546
OGYF01000413
[OGYF] human gut metagenome; faeces
17276
17359
+
Tyr
GTA
[ENA]
¢þ
>WENV181915293
OGYF01004786
[OGYF] human gut metagenome; faeces
6748
6831
+
Tyr
GTA
[ENA]
¢þ
>WENV181939894
OGYX01008465
[OGYX] human gut metagenome; faeces
1607
1524
-
Tyr
GTA
[ENA]
¢þ
>WENV181942338
OGYZ01000047
[OGYZ] human gut metagenome; faeces
62401
62484
+
Tyr
GTA
[ENA]
¢þ
>WENV182030069
OHCR01000443
[OHCR] human gut metagenome; feces
8842
8759
-
Tyr
GTA
[ENA]
¢þ
>WENV182047191
OHDW01022155
[OHDW] human gut metagenome; feces
541
624
+
Tyr
GTA
[ENA]
¢þ
>WENV182071040
OHFL01001118
[OHFL] human gut metagenome; feces
3120
3037
-
Tyr
GTA
[ENA]
¢þ
>WENV182216248
OHQM01043905
[OHQM] human gut metagenome; feces
249
332
+
Tyr
GTA
[ENA]
¢þ
>WENV182875536
OKRX01001880
[OKRX] human gut metagenome; faeces
5212
5295
+
Tyr
GTA
[ENA]
¢þ
>WENV182896136
OKSN01005324
[OKSN] human gut metagenome; feces
983
1066
+
Tyr
GTA
[ENA]
¢þ
>WENV183452741
OMDD01000146
[OMDD] human gut metagenome; feces
28890
28973
+
Tyr
GTA
[ENA]
¢þ
>WENV183510900
OMHT01000201
[OMHT] human oral metagenome; human oral
2061
1977
-
Tyr
GTA
[ENA]
¢þ
>WENV183647131
OQVR01067071
[OQVR] human gut metagenome; human gut
408
492
+
Tyr
GTA
[ENA]
¢þ
>WENV170061800
CDZI01064654
[CDZI] gut metagenome; human stools
12889
12806
-
Tyr
GTA
[ENA]
¢þ
>WENV170061917
CDZI01069996
[CDZI] gut metagenome; human stools
1
84
+
Tyr
GTA
[ENA]
¢þ
>WENV170644728
JMBW01074785
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
89
4
-
Tyr
GTA
[ENA]
¢þ
>WENV171002199
NFZJ01001205
[NFZJ] gut metagenome; feces
1
84
+
Tyr
GTA
[ENA]
¢þ
>WENV171002295
NFZJ01008451
[NFZJ] gut metagenome; feces
1310
1227
-
Tyr
GTA
[ENA]
¢þ
>C181102114
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
496627
496711
+
Tyr
GTA
-
¡û
>C181102117
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
660344
660427
+
Tyr
GTA
-
¡û
>C181102349
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
530316
530232
-
Tyr
GTA
-
¡û
>C181102352
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
364279
364196
-
Tyr
GTA
-
¡û
>C181102400
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
385843
385759
-
Tyr
GTA
-
¡û
>C181102403
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
221014
220931
-
Tyr
GTA
-
¡û
>C181102590
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1114057
1113973
-
Tyr
GTA
-
¡û
>C181102593
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
937133
937050
-
Tyr
GTA
-
¡û
>C181213918
LS483447
Bacteroidota
Porphyromonas crevioricanis NCTC12858 [LS483447]
1310666
1310583
-
Tyr
GTA
-
¡û
>C181213930
LS483447
Bacteroidota
Porphyromonas crevioricanis NCTC12858 [LS483447]
255557
255473
-
Tyr
GTA
-
¡û
>W141740405
JNOS01000003
Bacteroidota
Porphyromonas sp. KLE 1280 [JNOS]
381822
381739
-
Tyr
GTA
[ENA]
¡û
>W1910371181
FUFF01000008
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
154124
154208
+
Tyr
GTA
[ENA]
¡û
>W1910371184
FUFF01000008
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
320815
320898
+
Tyr
GTA
[ENA]
¡û
>W1910371226
FUFG01000019
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
120102
120186
+
Tyr
GTA
[ENA]
¡û
>W1910371230
FUFG01000021
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
108772
108855
+
Tyr
GTA
[ENA]
¡û
>W1910371311
FUFI01000009
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
44781
44864
+
Tyr
GTA
[ENA]
¡û
>W1910371319
FUFI01000016
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
38232
38148
-
Tyr
GTA
[ENA]
¡û
>W1910372558
FUGF01000022
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
107838
107921
+
Tyr
GTA
[ENA]
¡û
>W1910372573
FUGF01000050
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
44243
44159
-
Tyr
GTA
[ENA]
¡û
>W1910372597
FUGG01000005
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
17649
17733
+
Tyr
GTA
[ENA]
¡û
>W1910372619
FUGG01000046
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
76864
76947
+
Tyr
GTA
[ENA]
¡û
>W1911247446
NSLN01000008
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
53373
53289
-
Tyr
GTA
[ENA]
¡û
>W1911247460
NSLN01000018
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
38432
38349
-
Tyr
GTA
[ENA]
¡û
>W1911247488
NSLO01000002
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
19840
19756
-
Tyr
GTA
[ENA]
¡û
>W1911247517
NSLO01000044
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
227
310
+
Tyr
GTA
[ENA]
¡û
>W1911247615
NSLR01000002
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
44772
44855
+
Tyr
GTA
[ENA]
¡û
>W1911247643
NSLR01000033
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
14986
15070
+
Tyr
GTA
[ENA]
¡û
>W1911247700
NSLT01000001
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
30300
30384
+
Tyr
GTA
[ENA]
¡û
>W1911247718
NSLT01000012
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
12887
12804
-
Tyr
GTA
[ENA]
¡û
>W1911247786
NSLV01000001
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
122771
122855
+
Tyr
GTA
[ENA]
¡û
>W1911247793
NSLV01000005
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
46675
46758
+
Tyr
GTA
[ENA]
¡û
>W1911247881
NSLX01000003
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
20136
20052
-
Tyr
GTA
[ENA]
¡û
>W1911247888
NSLX01000008
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
27783
27700
-
Tyr
GTA
[ENA]
¡û
>C151089054
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1740895
1740810
-
Tyr
GTA
-
¡û
>C151089057
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1581616
1581533
-
Tyr
GTA
-
¡û
>C151089102
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1695175
1695090
-
Tyr
GTA
-
¡û
>C151089105
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1514267
1514184
-
Tyr
GTA
-
¡û
>W1511328356
JQJE01000020
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
51016
50931
-
Tyr
GTA
[ENA]
¡û
>W1511328380
JQJE01000044
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
1897
1980
+
Tyr
GTA
[ENA]
¡û
>W1511336518
JRAI01000002
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
24067
23982
-
Tyr
GTA
[ENA]
¡û
>W1511336555
JRAI01000081
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
9390
9473
+
Tyr
GTA
[ENA]
¡û
>W1511336811
JRAQ01000003
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
41360
41275
-
Tyr
GTA
[ENA]
¡û
>W1511336835
JRAQ01000022
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
118701
118784
+
Tyr
GTA
[ENA]
¡û
>W121073549
AJZS01000026
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
44015
43930
-
Tyr
GTA
[ENA]
¡û
>W121073577
AJZS01000092
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
4432
4349
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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