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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115561 (52 seq.)
>W1710892828
LNED01000043
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
177891
177973
+
Leu
TAA
[ENA]
¡û
>W1711385226
MEDW01000053
Alphaproteobacteria
Erythrobacter sp. SCN 62-14 [MEDW]
10140
10056
-
Leu
TAA
[ENA]
¡û
>W1711766277
MUYG01000007
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
70866
70950
+
Leu
TAA
[ENA]
¡û
>W1711793280
MWLM01000062
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
21715
21631
-
Leu
TAA
[ENA]
¡û
>C171057320
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
353972
354054
+
Leu
TAA
-
¡û
>WENV180019236
FTBO01000345
[FTBO] metagenome; soil
6457
6373
-
Leu
TAA
[ENA]
¡û
>WENV180041959
LLBZ010801972
[LLBZ] soil metagenome; soil from tomato rhizosphere
4
88
+
Leu
TAA
[ENA]
¡û
>WENV180106566
OAPE01169443
[OAPE] marine metagenome; Sterivex cartridges
117
201
+
Leu
TAA
[ENA]
¡û
>WENV181173132
OEIV011222640
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
51
135
+
Leu
TAA
[ENA]
¡û
>WENV183747839
PPFU01000453
[PPFU] hypolithon metagenome; Antarctic Hypolithon
13451
13535
+
Leu
TAA
[ENA]
¡û
>WENV170121054
CENL01043378
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
579
495
-
Leu
TAA
[ENA]
¡û
>WENV170937315
MDTG01289607
[MDTG] marine metagenome; seawater
3173
3257
+
Leu
TAA
[ENA]
¡û
>C191002607
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
422495
422411
-
Leu
TAA
-
¡û
>C191188814
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
606144
606228
+
Leu
TAA
-
¡û
>W1911823537
QZVQ01000023
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
6600
6684
+
Leu
TAA
[ENA]
¡û
>W1911823538
QZVQ01000024
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
2053
1969
-
Leu
TAA
[ENA]
¡û
>C151082925
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
2236897
2236813
-
Leu
TAA
-
¡û
>C151086224
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
319439
319355
-
Leu
TAA
[Ensembl]
¡û
>W2010523125
JAANOZ010000005
Alphaproteobacteria
Altererythrobacter sp. YJ20 [JAANOZ]
2945
3029
+
Leu
TAA
[ENA]
¡û
>W2010725787
JACIEL010000003
Alphaproteobacteria
Croceicoccus naphthovorans DSM 102796 [JACIEL]
73911
73995
+
Leu
TAA
[ENA]
¡û
>W2010731916
JACIJL010000002
Alphaproteobacteria
Altererythrobacter atlanticus DSM 100738 [JACIJL]
420446
420530
+
Leu
TAA
[ENA]
¡û
>W2011325538
QXFM01000112
Alphaproteobacteria
Erythrobacter xanthus CCTCC AB 2015396 [QXFM]
11338
11422
+
Leu
TAA
[ENA]
¡û
>W2011350528
QZVQ01000024
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
2053
1969
-
Leu
TAA
[ENA]
¡û
>W2011352520
RAHJ01000014
Alphaproteobacteria
Altererythrobacter sp. Ery12 [RAHJ]
227751
227667
-
Leu
TAA
[ENA]
¡û
>W2011353750
RAPF01000002
Alphaproteobacteria
Altererythrobacter sp. HN-Y73 [RAPF]
206115
206199
+
Leu
TAA
[ENA]
¡û
>W2011417964
RHHA01000001
Alphaproteobacteria
Altererythrobacter sp. FM1 [RHHA]
675394
675478
+
Leu
TAA
[ENA]
¡û
>W2011970571
VCAO01000003
Alphaproteobacteria
Erythrobacter sp. KEM-5 [VCAO]
291214
291298
+
Leu
TAA
[ENA]
¡û
>W2012438565
WTYA01000008
Alphaproteobacteria
Porphyrobacter algicida KEMB 9005-328 [WTYA]
131020
130936
-
Leu
TAA
[ENA]
¡û
>W2012439590
WTYW01000002
Alphaproteobacteria
Altererythrobacter aurantiacus MCCC 1A09962 [WTYW]
65098
65014
-
Leu
TAA
[ENA]
¡û
>W2110029014
BMKL01000001
Alphaproteobacteria
Altererythrobacter deserti CGMCC 1.15959 [BMKL]
2586065
2586149
+
Leu
TAA
[ENA]
¡û
>W2110030262
BMLK01000003
Alphaproteobacteria
Novosphingobium indicum CGMCC 1.6784 [BMLK]
38169
38085
-
Leu
TAA
[ENA]
¡û
>W2110190509
JABWCU010000008
Alphaproteobacteria
Novosphingobium profundi F72 [JABWCU]
70459
70543
+
Leu
TAA
[ENA]
¡û
>W2110456235
JAEVFE010000002
Alphaproteobacteria
Altererythrobacter sp. C41 [JAEVFE]
149612
149696
+
Leu
TAA
[ENA]
¡û
>W2110677978
JAIGNO010000002
Alphaproteobacteria
Qipengyuania sp. 6D47A [JAIGNO]
280399
280483
+
Leu
TAA
[ENA]
¡û
>C211031816
CP021247
Alphaproteobacteria
Novosphingobium sp. KA1 [CP021247, CP021248]
1445473
1445389
-
Leu
TAA
-
¡û
>C211100467
CP054856
Alphaproteobacteria
Novosphingobium sp. 502str22 [CP054856]
2631471
2631555
+
Leu
TAA
-
¡û
>C211148017
CP061510
Alphaproteobacteria
Tsuneonella flava SS-21NJ [CP061510]
772984
773068
+
Leu
TAA
-
¡û
>C211235814
CP067087
Alphaproteobacteria
Croceicoccus sp. YJ47 [CP067087]
1693638
1693554
-
Leu
TAA
-
¡û
>W1510012834
BBNP01000023
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
72210
72126
-
Leu
TAA
[ENA]
¡û
>C231161339
CP078091
Alphaproteobacteria
Porphyrobacter sp. ULC335 [CP078091]
647408
647326
-
Leu
TAA
-
¡û
>C231242212
CP087588
Alphaproteobacteria
Croceicoccus sp. Ery15 [CP087588]
2675715
2675799
+
Leu
TAA
-
¡û
>C231317782
CP092471
Alphaproteobacteria
Qipengyuania sp. PHS-Z21 [CP092471]
504974
504890
-
Leu
TAA
-
¡û
>C231555513
CP114054
Alphaproteobacteria
Aurantiacibacter sp. MUD11 [CP114054]
1820329
1820247
-
Leu
TAA
-
¡û
>C241162714
CP053921
Alphaproteobacteria
Erythrobacter mangrovi EB310 [CP053921]
1008084
1008000
-
Leu
TAA
-
¡û
>C241328107
CP136573
Alphaproteobacteria
Erythrobacter sp. [CP136573]
2135707
2135791
+
Leu
TAA
-
¡û
>W1511398009
JTDI01000002
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
119625
119541
-
Leu
TAA
[ENA]
¡û
>C161093696
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1022897
1022815
-
Leu
TAA
[Ensembl]
¡û
>W1610535222
JRQQ01000005
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
146604
146520
-
Leu
TAA
[ENA]
¡û
>W1610550567
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2919714
2919798
+
Leu
TAA
[ENA]
¡û
>W1610649220
LJHV01000008
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
519845
519763
-
Leu
TAA
[ENA]
¡û
>W1610753094
LNED01000043
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
177891
177973
+
Leu
TAA
[ENA]
¡û
>W1710660330
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2919714
2919798
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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