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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115574 (123 seq.)
>W1710876600
LMPJ01000001
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
1071104
1071018
-
Leu
TAA
[ENA]
¡û
>W1711132202
LUVZ01000012
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
99932
99846
-
Leu
TAA
[ENA]
¡û
>W1711132204
LUVZ01000012
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
99571
99485
-
Leu
TAA
[ENA]
¡û
>W1711318296
MAYF01000124
Bacteroidota
Chryseobacterium contaminans [MAYF]
17766
17680
-
Leu
TAA
[ENA]
¡û
>W1711318298
MAYF01000124
Bacteroidota
Chryseobacterium contaminans [MAYF]
17429
17343
-
Leu
TAA
[ENA]
¡û
>W1711318404
MAYG01000012
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
103116
103030
-
Leu
TAA
[ENA]
¡û
>W1711318481
MAYH01000045
Bacteroidota
Chryseobacterium artocarpi [MAYH]
86356
86270
-
Leu
TAA
[ENA]
¡û
>W1711318483
MAYH01000045
Bacteroidota
Chryseobacterium artocarpi [MAYH]
85999
85913
-
Leu
TAA
[ENA]
¡û
>W1711487722
MKGI01000076
Bacteroidota
Cloacibacterium normanense [MKGI]
55215
55131
-
Leu
TAA
[ENA]
¡û
>C171083766
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
5089981
5089895
-
Leu
TAA
-
¡û
>C171083768
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
5089617
5089531
-
Leu
TAA
-
¡û
>WENV180283568
OBID01000760
[OBID] metagenome; sludge
8725
8809
+
Leu
TAA
[ENA]
¢þ
>WENV181168846
OEIU01838275
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
179
95
-
Leu
TAA
[ENA]
¢þ
>WENV181205678
OFAO01002851
[OFAO] metagenome; hydrothermal vent
255
171
-
Leu
TAA
[ENA]
¢þ
>WENV181206081
OFAS01004484
[OFAS] metagenome; hydrothermal vent
139
55
-
Leu
TAA
[ENA]
¢þ
>W141168412
AXUZ01000003
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
638436
638522
+
Leu
TAA
[ENA]
¡û
>WENV181834699
OGVG01000009
[OGVG] freshwater metagenome; freshwater
29496
29412
-
Leu
TAA
[ENA]
¢þ
>W141233105
BAVL01000004
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
11484
11398
-
Leu
TAA
[ENA]
¡û
>WENV170009910
APMI01004840
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4160
4074
-
Leu
TAA
[ENA]
¢þ
>WENV170658552
JTFP01141795
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
105
191
+
Leu
TAA
[ENA]
¢þ
>C181056692
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
3984240
3984156
-
Leu
TAA
-
¡û
>C181061649
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
3165696
3165612
-
Leu
TAA
-
¡û
>C181061652
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
3165315
3165231
-
Leu
TAA
-
¡û
>C181075454
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
3306959
3306875
-
Leu
TAA
-
¡û
>C181092466
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
3988593
3988509
-
Leu
TAA
-
¡û
>C191025412
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
2469598
2469514
-
Leu
TAA
-
¡û
>C191111284
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
1289936
1290020
+
Leu
TAA
-
¡û
>C191112464
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
4728532
4728448
-
Leu
TAA
-
¡û
>C191112466
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
4728162
4728078
-
Leu
TAA
-
¡û
>C191112911
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
4696060
4696144
+
Leu
TAA
-
¡û
>C191115774
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3036926
3036842
-
Leu
TAA
-
¡û
>C191115776
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3036586
3036502
-
Leu
TAA
-
¡û
>C191115870
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
1182518
1182434
-
Leu
TAA
-
¡û
>C191115935
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
4685841
4685757
-
Leu
TAA
-
¡û
>C191116248
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
3277297
3277213
-
Leu
TAA
-
¡û
>C191116333
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
3112580
3112496
-
Leu
TAA
-
¡û
>C191116428
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
1115984
1115900
-
Leu
TAA
-
¡û
>C191120396
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
2527302
2527386
+
Leu
TAA
-
¡û
>C191204297
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
3458621
3458537
-
Leu
TAA
-
¡û
>C191204299
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
3458257
3458173
-
Leu
TAA
-
¡û
>C191210033
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
123623
123539
-
Leu
TAA
-
¡û
>C191210035
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
123283
123199
-
Leu
TAA
-
¡û
>C191218967
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
3102516
3102432
-
Leu
TAA
-
¡û
>W09127009
ACKQ01000058
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
92160
92074
-
Leu
TAA
[ENA]
¡û
>W09127011
ACKQ01000058
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
91796
91710
-
Leu
TAA
[ENA]
¡û
>W141809281
JPRJ01000002
Bacteroidota
Chryseobacterium piperi [JPRJ]
223739
223653
-
Leu
TAA
[ENA]
¡û
>W141815920
JQJM01000012
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
91850
91764
-
Leu
TAA
[ENA]
¡û
>W141815922
JQJM01000012
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
91486
91400
-
Leu
TAA
[ENA]
¡û
>W1910184813
BJTC01000004
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
270534
270618
+
Leu
TAA
[ENA]
¡û
>W1910341149
FTPE01000001
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
81379
81295
-
Leu
TAA
[ENA]
¡û
>W1910341151
FTPE01000001
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
81018
80934
-
Leu
TAA
[ENA]
¡û
>W1911218424
NRQS01000008
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
107198
107114
-
Leu
TAA
[ENA]
¡û
>W1911218426
NRQS01000008
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
106861
106777
-
Leu
TAA
[ENA]
¡û
>W1911218479
NRQT01000007
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
107203
107119
-
Leu
TAA
[ENA]
¡û
>W1911218481
NRQT01000007
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
106866
106782
-
Leu
TAA
[ENA]
¡û
>W1911566392
PCOU01000011
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
103084
103000
-
Leu
TAA
[ENA]
¡û
>W1911566394
PCOU01000011
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
102720
102636
-
Leu
TAA
[ENA]
¡û
>W1911567054
PCPH01000003
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
86033
85949
-
Leu
TAA
[ENA]
¡û
>W1911567057
PCPH01000003
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
85659
85575
-
Leu
TAA
[ENA]
¡û
>W1911567478
PCPP01000002
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
86529
86445
-
Leu
TAA
[ENA]
¡û
>W1911567481
PCPP01000002
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
86155
86071
-
Leu
TAA
[ENA]
¡û
>W1911586383
PIZV01000026
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
109497
109581
+
Leu
TAA
[ENA]
¡û
>W1911586385
PIZV01000026
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
109866
109950
+
Leu
TAA
[ENA]
¡û
>W1911647556
QAJO01000004
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
662364
662448
+
Leu
TAA
[ENA]
¡û
>W1911647558
QAJO01000004
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
662729
662813
+
Leu
TAA
[ENA]
¡û
>W1911680431
QICI01000072
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
93672
93588
-
Leu
TAA
[ENA]
¡û
>W1911680433
QICI01000072
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
93307
93223
-
Leu
TAA
[ENA]
¡û
>W1911680485
QICX01000007
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
150149
150233
+
Leu
TAA
[ENA]
¡û
>W1911680487
QICX01000007
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
150512
150596
+
Leu
TAA
[ENA]
¡û
>W1911701177
QNUE01000003
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
327000
326916
-
Leu
TAA
[ENA]
¡û
>W1911701817
QNVT01000018
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
100778
100694
-
Leu
TAA
[ENA]
¡û
>W1911701819
QNVT01000018
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
100437
100353
-
Leu
TAA
[ENA]
¡û
>W1810234209
PPEG02000001
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
684790
684874
+
Leu
TAA
[ENA]
¡û
>W1810234211
PPEG02000001
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
685155
685239
+
Leu
TAA
[ENA]
¡û
>W1810234283
PPEH01000001
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
391584
391500
-
Leu
TAA
[ENA]
¡û
>W1810304697
PTPZ01000002
Bacteroidota
Cloacibacterium normanense IMET F [PTPZ]
336672
336756
+
Leu
TAA
[ENA]
¡û
>W1810475437
QAJA01000289
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
3325
3409
+
Leu
TAA
[ENA]
¡û
>W1810475439
QAJA01000289
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
3688
3772
+
Leu
TAA
[ENA]
¡û
>W1810538580
QDFZ01000003
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
85010
84926
-
Leu
TAA
[ENA]
¡û
>W1810538582
QDFZ01000003
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
84649
84565
-
Leu
TAA
[ENA]
¡û
>W1810609258
QGTV01000024
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
66952
66868
-
Leu
TAA
[ENA]
¡û
>W1810609260
QGTV01000024
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
66590
66506
-
Leu
TAA
[ENA]
¡û
>W1810860757
QTTJ01000002
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
663350
663434
+
Leu
TAA
[ENA]
¡û
>C151002562
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
724546
724632
+
Leu
TAA
[Ensembl]
¡û
>C151002564
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
724887
724973
+
Leu
TAA
[Ensembl]
¡û
>W1511432229
JUGI01000021
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
106205
106291
+
Leu
TAA
[ENA]
¡û
>W1511432231
JUGI01000021
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
106566
106652
+
Leu
TAA
[ENA]
¡û
>W1511432451
JUGN01000012
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
84151
84065
-
Leu
TAA
[ENA]
¡û
>W1511432453
JUGN01000012
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
83789
83703
-
Leu
TAA
[ENA]
¡û
>W1511432519
JUGO01000010
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
82717
82631
-
Leu
TAA
[ENA]
¡û
>W1511432521
JUGO01000010
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
82355
82269
-
Leu
TAA
[ENA]
¡û
>W1511432587
JUGP01000007
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
115176
115090
-
Leu
TAA
[ENA]
¡û
>W1511432589
JUGP01000007
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
114815
114729
-
Leu
TAA
[ENA]
¡û
>C161055060
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
3737938
3738022
+
Leu
TAA
[Ensembl]
¡û
>W1610205661
FCNN01000194
Bacteroidota
Chryseobacterium indologenes [FCNN]
12216
12130
-
Leu
TAA
[ENA]
¡û
>W1610436686
FJVD01000007
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
232977
233063
+
Leu
TAA
[ENA]
¡û
>W1610436688
FJVD01000007
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
233317
233403
+
Leu
TAA
[ENA]
¡û
>W1610738946
LMPJ01000001
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
1071104
1071018
-
Leu
TAA
[ENA]
¡û
>W1610943275
LUVZ01000012
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
99932
99846
-
Leu
TAA
[ENA]
¡û
>W1610943277
LUVZ01000012
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
99571
99485
-
Leu
TAA
[ENA]
¡û
>W1611061639
MAYF01000124
Bacteroidota
Chryseobacterium contaminans [MAYF]
17766
17680
-
Leu
TAA
[ENA]
¡û
>W1611061641
MAYF01000124
Bacteroidota
Chryseobacterium contaminans [MAYF]
17429
17343
-
Leu
TAA
[ENA]
¡û
>W1611061747
MAYG01000012
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
103116
103030
-
Leu
TAA
[ENA]
¡û
>W1611061824
MAYH01000045
Bacteroidota
Chryseobacterium artocarpi [MAYH]
86356
86270
-
Leu
TAA
[ENA]
¡û
>W1611061826
MAYH01000045
Bacteroidota
Chryseobacterium artocarpi [MAYH]
85999
85913
-
Leu
TAA
[ENA]
¡û
>WENV080190
AATO01011644
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
128
40
-
Leu
TAA
[ENA]
>W1710207162
FCNN01000194
Bacteroidota
Chryseobacterium indologenes [FCNN]
12216
12130
-
Leu
TAA
[ENA]
¡û
>W1710436422
FJVD01000007
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
232977
233063
+
Leu
TAA
[ENA]
¡û
>W1710436424
FJVD01000007
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
233317
233403
+
Leu
TAA
[ENA]
¡û
>W1710518798
FNEG01000002
Bacteroidota
Chryseobacterium jejuense [FNEG]
694180
694266
+
Leu
TAA
[ENA]
¡û
>W1710518800
FNEG01000002
Bacteroidota
Chryseobacterium jejuense [FNEG]
694521
694607
+
Leu
TAA
[ENA]
¡û
>W1710524995
FNJE01000004
Bacteroidota
Cloacibacterium normanense [FNJE]
54856
54772
-
Leu
TAA
[ENA]
¡û
>W1710526622
FNKL01000002
Bacteroidota
Chryseobacterium soldanellicola [FNKL]
680953
681037
+
Leu
TAA
[ENA]
¡û
>W1710540308
FNWQ01000003
Bacteroidota
Chryseobacterium culicis [FNWQ]
645522
645608
+
Leu
TAA
[ENA]
¡û
>W1710540310
FNWQ01000003
Bacteroidota
Chryseobacterium culicis [FNWQ]
645884
645970
+
Leu
TAA
[ENA]
¡û
>W1710565755
FORL01000003
Bacteroidota
Chryseobacterium indologenes [FORL]
664015
664101
+
Leu
TAA
[ENA]
¡û
>W1710591069
FRBM01000001
Bacteroidota
Chryseobacterium contaminans [FRBM]
96370
96284
-
Leu
TAA
[ENA]
¡û
>W1710591071
FRBM01000001
Bacteroidota
Chryseobacterium contaminans [FRBM]
96033
95947
-
Leu
TAA
[ENA]
¡û
>W1710594735
FSRK01000002
Bacteroidota
Epilithonimonas zeae [FSRK]
718995
719079
+
Leu
TAA
[ENA]
¡û
>W1710596676
FTMT01000004
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
171262
171348
+
Leu
TAA
[ENA]
¡û
>W1710596678
FTMT01000004
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
171624
171710
+
Leu
TAA
[ENA]
¡û
>W1710599073
FTOL01000003
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
63885
63799
-
Leu
TAA
[ENA]
¡û
>W1710599075
FTOL01000003
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
63529
63443
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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