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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116479 (11 seq.)
>C171036928
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
738273
738190
-
Leu
CAA
-
¡û
>WENV181384220
OFRH01037727
[OFRH] wastewater metagenome; Exp Tend NO 100WW
474
555
+
Leu
CAA
[ENA]
¢þ
>WENV183635780
OOIX01006601
[OOIX] human gut metagenome; mucous membran biopsy from the gut
274
355
+
Leu
CAA
[ENA]
¢þ
>WENV170621724
FUWD013070798
[FUWD] metagenome; unknown
342
425
+
Leu
CAA
[ENA]
¢þ
>WENV170629911
FUWD013286488
[FUWD] metagenome; unknown
342
425
+
Leu
CAA
[ENA]
¢þ
>C191178325
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
640571
640652
+
Leu
CAA
-
¡û
>C191178364
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
623086
623167
+
Leu
CAA
-
¡û
>C191178403
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
606872
606953
+
Leu
CAA
-
¡û
>WENV024626
AACY020823267
Marine microbial communities from Global Ocean Sampling (GOS)
626
543
-
Leu
CAA
[ENA]
>C151025294
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
778362
778279
-
Leu
CAA
[Ensembl]
¡û
>WENV057664
AACY023301950
Marine microbial communities from Global Ocean Sampling (GOS)
1425
1342
-
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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