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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116527 (11 seq.)
>C171074597
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1268641
1268724
+
Leu
CAA
-
¡û
>C171074649
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1259638
1259721
+
Leu
CAA
-
¡û
>C171074701
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1266910
1266993
+
Leu
CAA
-
¡û
>C171074753
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1268642
1268725
+
Leu
CAA
-
¡û
>C171074805
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1248924
1249007
+
Leu
CAA
-
¡û
>WENV183667419
ORJL010646272
[ORJL] groundwater metagenome; groundwater
2205
2122
-
Leu
CAA
[ENA]
¢þ
>WENV183693328
ORMF012062949
[ORMF] groundwater metagenome; groundwater
85
2
-
Leu
CAA
[ENA]
¢þ
>W1910913967
NHRY01000207
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
19291
19208
-
Leu
CAA
[ENA]
¡û
>C151004017
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1271327
1271410
+
Leu
CAA
[Ensembl]
¡û
>C151004092
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2199447
2199364
-
Leu
CAA
[Ensembl]
¡û
>C151004144
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2166880
2166797
-
Leu
CAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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