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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117775 (26 seq.)
>W131145962
AQGL01000005
Actinomycetota
Bifidobacterium longum D2957 [AQGL]
37530
37446
-
Tyr
GTA
[ENA]
¡û
>WENV181216997
OFCH01000019
[OFCH] metagenome; Human gut stool
54098
54016
-
Tyr
GTA
[ENA]
¢þ
>WENV181220079
OFCQ01000055
[OFCQ] metagenome; Human gut stool
85319
85237
-
Tyr
GTA
[ENA]
¢þ
>WENV181225717
OFDJ01000053
[OFDJ] metagenome; Human gut stool
63057
62975
-
Tyr
GTA
[ENA]
¢þ
>W141524344
JGYZ01000004
Actinomycetota
Bifidobacterium longum subsp. longum [JGYZ]
3690
3606
-
Tyr
GTA
[ENA]
¡û
>C191208465
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1463218
1463300
+
Tyr
GTA
-
¡û
>C191209150
LR134369
Actinomycetota
Bifidobacterium longum NCTC11818 [LR134369]
1129037
1128953
-
Tyr
GTA
-
¡û
>W1910343127
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
38193
38275
+
Tyr
GTA
[ENA]
¡û
>W1910343216
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
19766
19684
-
Tyr
GTA
[ENA]
¡û
>W1910343430
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
22198
22116
-
Tyr
GTA
[ENA]
¡û
>C09102376
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1463423
1463507
+
Tyr
GTA
-
¡û
>W1810813778
QRZU01000013
Actinomycetota
Bifidobacterium longum AF13-41 [QRZU]
473
389
-
Tyr
GTA
[ENA]
¡û
>W1810813997
QRZY01000014
Actinomycetota
Bifidobacterium longum AF13-34 [QRZY]
473
389
-
Tyr
GTA
[ENA]
¡û
>W1510059593
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
3269
3353
+
Tyr
GTA
[ENA]
¡û
>W1510059659
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
3398
3482
+
Tyr
GTA
[ENA]
¡û
>W1510059726
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
2720
2804
+
Tyr
GTA
[ENA]
¡û
>W1510059793
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
3397
3481
+
Tyr
GTA
[ENA]
¡û
>W1510059859
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
38145
38229
+
Tyr
GTA
[ENA]
¡û
>W1510059926
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
38173
38257
+
Tyr
GTA
[ENA]
¡û
>W1510059993
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
38169
38253
+
Tyr
GTA
[ENA]
¡û
>W1510060060
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
38141
38225
+
Tyr
GTA
[ENA]
¡û
>C11103155
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1463214
1463298
+
Tyr
GTA
-
¡û
>C11103222
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1463214
1463298
+
Tyr
GTA
-
¡û
>C11103461
AP010888
Actinomycetota
Bifidobacterium longum subsp. longum JCM 1217 [AP010888]
1129037
1128953
-
Tyr
GTA
[Ensembl]
¡û
>W1610518902
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
47960
47876
-
Tyr
GTA
[ENA]
¡û
>W1710534450
FNRW01000002
Actinomycetota
Bifidobacterium longum [FNRW]
608346
608262
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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