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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117803 (72 seq.)
>W131051773
AMXV01000025
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
47971
47887
-
Leu
TAG
[ENA]
¡û
>W131223046
AUBT01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
437474
437558
+
Leu
TAG
[ENA]
¡û
>W1711710583
MSZP01000001
Betaproteobacteria
Alcaligenes faecalis [MSZP]
1019574
1019658
+
Leu
TAG
[ENA]
¡û
>W1711711866
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
1464658
1464742
+
Leu
TAG
[ENA]
¡û
>C171098227
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
584947
585031
+
Leu
TAG
-
¡û
>C171115529
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1620296
1620212
-
Leu
TAG
-
¡û
>W141104401
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
868541
868625
+
Leu
TAG
[ENA]
¡û
>W141237705
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
176
92
-
Leu
TAG
[ENA]
¡û
>WENV183733417
PJTY01001817
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3972
4056
+
Leu
TAG
[ENA]
¡û
>WENV183741191
PJUF01053178
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
159
75
-
Leu
TAG
[ENA]
¡û
>WENV170136558
CENV01047958
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3988
4072
+
Leu
TAG
[ENA]
¡û
>WENV170201077
CEPP01070070
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
86
2
-
Leu
TAG
[ENA]
¡û
>WENV170657371
JTFO01137179
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1035
951
-
Leu
TAG
[ENA]
¡û
>WENV170658256
JTFP01076471
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
558
642
+
Leu
TAG
[ENA]
¡û
>WENV170705502
LNAO01001148
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3199
3115
-
Leu
TAG
[ENA]
¡û
>WENV170965932
MTEV01010427
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2799
2883
+
Leu
TAG
[ENA]
¡û
>C181088606
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
1358555
1358471
-
Leu
TAG
-
¡û
>C191113962
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
2633221
2633137
-
Leu
TAG
-
¡û
>C191149644
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
3384944
3385028
+
Leu
TAG
-
¡û
>W1910927825
NIQA01000008
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
390
306
-
Leu
TAG
[ENA]
¡û
>W1911180894
NQOU01000001
Betaproteobacteria
Pusillimonas sp. 17-4A [NQOU]
81171
81087
-
Leu
TAG
[ENA]
¡û
>W1810062095
PDNV01000007
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
103193
103277
+
Leu
TAG
[ENA]
¡û
>W2010493180
JAAKGR010000004
Betaproteobacteria
Parapusillimonas sp. SGNA-6 [JAAKGR]
148300
148216
-
Leu
TAG
[ENA]
¡û
>W2010523909
JAANPV010000003
Betaproteobacteria
Paenalcaligenes suwonensis 191B [JAANPV]
52665
52749
+
Leu
TAG
[ENA]
¡û
>W2010567258
JAATIZ010000001
Betaproteobacteria
Paenalcaligenes hominis DSM 26613 [JAATIZ]
498171
498087
-
Leu
TAG
[ENA]
¡û
>W2010673643
JACCEM010000009
Betaproteobacteria
Parapusillimonas granuli LMG 24012 [JACCEM]
124986
124902
-
Leu
TAG
[ENA]
¡û
>W2010673726
JACCEO010000007
Betaproteobacteria
Alcaligenaceae bacterium CGII-43 [JACCEO]
100670
100586
-
Leu
TAG
[ENA]
¡û
>W2010673784
JACCEP010000015
Betaproteobacteria
Alcaligenaceae bacterium CGII-56 [JACCEP]
23047
23131
+
Leu
TAG
[ENA]
¡û
>W2010673817
JACCEQ010000004
Betaproteobacteria
Alcaligenaceae bacterium CGII-57 [JACCEQ]
245067
245151
+
Leu
TAG
[ENA]
¡û
>W2010673831
JACCER010000001
Betaproteobacteria
Alcaligenaceae bacterium CGII-64 [JACCER]
467338
467422
+
Leu
TAG
[ENA]
¡û
>W2010673948
JACCET010000006
Betaproteobacteria
Alcaligenaceae bacterium CAII-52 [JACCET]
92898
92982
+
Leu
TAG
[ENA]
¡û
>W2010673983
JACCEU010000004
Betaproteobacteria
Eoetvoesia caeni PB3-7B [JACCEU]
264477
264561
+
Leu
TAG
[ENA]
¡û
>W2010702650
JACHHM010000011
Betaproteobacteria
Parapusillimonas granuli DSM 18079 [JACHHM]
78028
78112
+
Leu
TAG
[ENA]
¡û
>W2010743131
JACJUU010000007
Betaproteobacteria
Pusillimonas sp. 7-48 [JACJUU]
31090
31006
-
Leu
TAG
[ENA]
¡û
>W2010978124
NIQA01000008
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
390
306
-
Leu
TAG
[ENA]
¡û
>W2011036828
NQOU01000001
Betaproteobacteria
Pusillimonas sp. 17-4A [NQOU]
81171
81087
-
Leu
TAG
[ENA]
¡û
>W2011353816
RAPG01000008
Betaproteobacteria
Pusillimonas ginsengisoli SBSA [RAPG]
115302
115218
-
Leu
TAG
[ENA]
¡û
>W2011505438
RYDV01000001
Betaproteobacteria
Candidimonas sp. SYP-B2681 [RYDV]
384237
384153
-
Leu
TAG
[ENA]
¡û
>W2011549983
SDQD01000002
Betaproteobacteria
Pusillimonas harenae JCM 16917 [SDQD]
1071534
1071618
+
Leu
TAG
[ENA]
¡û
>W2011681054
SRSN01000054
Betaproteobacteria
Alcaligenaceae bacterium 429 [SRSN]
3673
3757
+
Leu
TAG
[ENA]
¡û
>W2110019197
BMCQ01000004
Betaproteobacteria
Paenalcaligenes hominis CCM 7698 [BMCQ]
346465
346549
+
Leu
TAG
[ENA]
¡û
>W2110050551
BMZN01000004
Betaproteobacteria
Alcaligenes pakistanensis KCTC 42083 [BMZN]
210780
210864
+
Leu
TAG
[ENA]
¡û
>W2110403505
JADZNW010000031
Betaproteobacteria
Alcaligenes faecalis A21 [JADZNW]
21021
20937
-
Leu
TAG
[ENA]
¡û
>W2110558851
JAGKLK010000009
Betaproteobacteria
Alcaligenes faecalis 2021EL-00128 [JAGKLK]
44945
45029
+
Leu
TAG
[ENA]
¡û
>W2110610453
JAHKKC010000013
Betaproteobacteria
Alcaligenes sp. 13f [JAHKKC]
112287
112203
-
Leu
TAG
[ENA]
¡û
>W2110645086
JAHTBN010000005
Betaproteobacteria
Candidimonas humi DSM 25336 [JAHTBN]
259769
259685
-
Leu
TAG
[ENA]
¡û
>W2110645108
JAHTBO010000001
Betaproteobacteria
Alcaligenaceae bacterium CGII-47 [JAHTBO]
546125
546041
-
Leu
TAG
[ENA]
¡û
>C211071188
CP047670
Betaproteobacteria
Alcaligenes faecalis SCSIO B001 [CP047670]
1727291
1727207
-
Leu
TAG
-
¡û
>C211079362
CP049362
Betaproteobacteria
Alcaligenes sp. HO-1 [CP049362]
1559264
1559348
+
Leu
TAG
-
¡û
>C211221333
CP066058
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_1024 [CP066058]
3378511
3378595
+
Leu
TAG
-
¡û
>W2110739993
JAJEWL010000006
Betaproteobacteria
Pusillimonas sp. MFBS29 [JAJEWL]
119604
119520
-
Leu
TAG
[ENA]
¡û
>C231125821
CP071957
Betaproteobacteria
Alcaligenes faecalis JLAF9 [CP071957]
1695908
1695824
-
Leu
TAG
-
¡û
>C231265695
CP089848
Betaproteobacteria
Paralcaligenes sp. KSB-10 [CP089848]
222111
222195
+
Leu
TAG
-
¡û
>C231313610
CP092182
Betaproteobacteria
Alcaligenes faecalis T17 [CP092182]
1706827
1706743
-
Leu
TAG
-
¡û
>C231346213
CP094619
Betaproteobacteria
Alcaligenes aquatilis AS1 [CP094619]
1505089
1505005
-
Leu
TAG
-
¡û
>C231364922
CP095873
Betaproteobacteria
Alcaligenes faecalis D334 [CP095873]
2421804
2421888
+
Leu
TAG
-
¡û
>C231375300
CP096916
Betaproteobacteria
Alcaligenes faecalis NY11312 [CP096916]
1819199
1819115
-
Leu
TAG
-
¡û
>C231383364
CP097341
Betaproteobacteria
Alcaligenes faecalis DY-8 [CP097341]
1671206
1671122
-
Leu
TAG
-
¡û
>C231431664
CP100755
Betaproteobacteria
Alcaligenes sp. NLF5-7 [CP100755]
4254817
4254901
+
Leu
TAG
-
¡û
>C231516396
CP107548
Betaproteobacteria
Pusillimonas sp. M17 [CP107548]
1622361
1622277
-
Leu
TAG
-
¡û
>C241127451
CP048039
Betaproteobacteria
Alcaligenes faecalis MUB14 [CP048039]
1891291
1891207
-
Leu
TAG
-
¡û
>C241140251
CP049990
Betaproteobacteria
Pusillimonas sp. DMV24BSW_D [CP049990]
2026014
2026098
+
Leu
TAG
-
¡û
>W2130031245
JAFMOE010000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis HZ01 [JAFMOE]
308407
308491
+
Leu
TAG
[ENA]
¡û
>C241390509
OY288190
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis ATCC8750 [OY288190]
1641397
1641313
-
Leu
TAG
-
¡û
>W1511321003
JQCV01000001
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
324903
324987
+
Leu
TAG
[ENA]
¡û
>C11118217
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
819890
819806
-
Leu
TAG
[Ensembl]
¡û
>W1511537487
JZBR01000009
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
471128
471212
+
Leu
TAG
[ENA]
¡û
>W1610093555
CYTB01000002
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
248
164
-
Leu
TAG
[ENA]
¡û
>W121091202
AKMR01000005
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
148243
148159
-
Leu
TAG
[ENA]
¡û
>W1610921543
LSUO01000028
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
7629
7713
+
Leu
TAG
[ENA]
¡û
>W1710082506
BDHG01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
955767
955851
+
Leu
TAG
[ENA]
¡û
>W1710586412
FQXE01000009
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
101382
101466
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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