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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117880 (25 seq.)
>W131109433
APHV01000095
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
44747
44831
+
Leu
TAG
[ENA]
¡û
>W131223642
AUCF01000010
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
214400
214484
+
Leu
TAG
[ENA]
¡û
>WENV180264371
OBEQ011565133
[OBEQ] groundwater metagenome; groundwater
403
487
+
Leu
TAG
[ENA]
¢þ
>WENV181223239
OFDC01003715
[OFDC] hot springs metagenome; Water
5842
5926
+
Leu
TAG
[ENA]
¢þ
>WENV181226996
OFDN01000821
[OFDN] hot springs metagenome; Water
7052
7136
+
Leu
TAG
[ENA]
¢þ
>WENV183727421
PJTO01051389
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
157
73
-
Leu
TAG
[ENA]
¢þ
>C181063171
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
527529
527445
-
Leu
TAG
-
¡û
>W141520262
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
2043385
2043301
-
Leu
TAG
[ENA]
¡û
>C191087894
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
215142
215226
+
Leu
TAG
-
¡û
>C191088016
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
45394
45478
+
Leu
TAG
-
¡û
>C191088079
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
2719859
2719943
+
Leu
TAG
-
¡û
>W1910613062
LGQV01000092
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
82272
82188
-
Leu
TAG
[ENA]
¡û
>W1910613271
LGQZ01000013
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
115065
114981
-
Leu
TAG
[ENA]
¡û
>W1910613384
LGRK01000013
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
3502
3586
+
Leu
TAG
[ENA]
¡û
>W1911138115
NOWT01000029
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
81779
81695
-
Leu
TAG
[ENA]
¡û
>W1911768748
QXHE01000003
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
158610
158526
-
Leu
TAG
[ENA]
¡û
>W1810222256
POQV01000007
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
178196
178112
-
Leu
TAG
[ENA]
¡û
>W1810223545
POTD01000008
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
178196
178112
-
Leu
TAG
[ENA]
¡û
>W1810226108
POWG01000023
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
28429
28513
+
Leu
TAG
[ENA]
¡û
>W1810692574
QLKQ01000021
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
10907
10823
-
Leu
TAG
[ENA]
¡û
>C151034767
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1731895
1731811
-
Leu
TAG
[Ensembl]
¡û
>C121017701
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
1505151
1505235
+
Leu
TAG
[Ensembl]
¡û
>C161047360
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1330020
1330104
+
Leu
TAG
[Ensembl]
¡û
>W1710626664
JPIR01000005
Alphaproteobacteria
Azospirillum brasilense [JPIR]
177920
177836
-
Leu
TAG
[ENA]
¡û
>W1710626786
JPIS01000092
Alphaproteobacteria
Azospirillum brasilense [JPIS]
11447
11531
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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