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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117881 (128 seq.)
>W1711540062
MLZL01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
74567
74483
-
Leu
TAG
[ENA]
¡û
>W131217494
ATWW01000007
Actinomycetota
Bifidobacterium pseudolongum AGR2145 [ATWW]
34433
34517
+
Leu
TAG
[ENA]
¡û
>WENV180217675
OBAR01003309
[OBAR] human gut metagenome; human gut
2278
2361
+
Leu
TAG
[ENA]
¢þ
>WENV180277823
OBHX01000924
[OBHX] metagenome; feces
12930
13013
+
Leu
TAG
[ENA]
¢þ
>WENV180327039
OBKS01361888
[OBKS] human gut metagenome; human gut
66
149
+
Leu
TAG
[ENA]
¢þ
>WENV180333098
OBLF01000202
[OBLF] metagenome; feces
40914
40831
-
Leu
TAG
[ENA]
¢þ
>WENV180348135
OBLO01003286
[OBLO] metagenome; feces
11588
11505
-
Leu
TAG
[ENA]
¢þ
>WENV180443740
OBWY01051069
[OBWY] human gut metagenome; faeces
24
107
+
Leu
TAG
[ENA]
¢þ
>WENV180495913
OCAC01000104
[OCAC] human gut metagenome; faeces
14416
14499
+
Leu
TAG
[ENA]
¢þ
>WENV180598613
OCPN01000003
[OCPN] human gut metagenome; faeces
217255
217338
+
Leu
TAG
[ENA]
¢þ
>WENV181274025
OFGH01032059
[OFGH] mouse gut metagenome; faeces
371
286
-
Leu
TAG
[ENA]
¢þ
>WENV181274948
OFGI01021871
[OFGI] mouse gut metagenome; faeces
117
32
-
Leu
TAG
[ENA]
¢þ
>WENV181301143
OFHN01039338
[OFHN] mouse gut metagenome; faeces
796
881
+
Leu
TAG
[ENA]
¢þ
>WENV181434349
OGDF01000616
[OGDF] human gut metagenome; human gut
2820
2903
+
Leu
TAG
[ENA]
¢þ
>WENV181439555
OGDN01000046
[OGDN] human gut metagenome; human gut
191181
191264
+
Leu
TAG
[ENA]
¢þ
>W08009142
ABOT01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
74268
74184
-
Leu
TAG
[ENA]
¡û
>WENV181752765
OGQQ01014731
[OGQQ] human gut metagenome; faeces
1070
987
-
Leu
TAG
[ENA]
¢þ
>WENV181903666
OGXX01002123
[OGXX] human gut metagenome; faeces
15279
15362
+
Leu
TAG
[ENA]
¢þ
>W141258197
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
1504126
1504210
+
Leu
TAG
[ENA]
¡û
>WENV182764306
OJRP01007961
[OJRP] human gut metagenome; stool sample
1887
1970
+
Leu
TAG
[ENA]
¢þ
>WENV183136023
OLOF01000003
[OLOF] human gut metagenome; faeces
7684
7601
-
Leu
TAG
[ENA]
¢þ
>WENV183147463
OLON01000269
[OLON] human gut metagenome; faeces
7682
7599
-
Leu
TAG
[ENA]
¢þ
>WENV183171431
OLPC01000161
[OLPC] human gut metagenome; faeces
7688
7605
-
Leu
TAG
[ENA]
¢þ
>WENV183174540
OLPE01001949
[OLPE] human gut metagenome; faeces
7625
7542
-
Leu
TAG
[ENA]
¢þ
>WENV183182297
OLPK01000133
[OLPK] human gut metagenome; faeces
35094
35179
+
Leu
TAG
[ENA]
¢þ
>WENV183188756
OLPP01023517
[OLPP] human gut metagenome; faeces
516
433
-
Leu
TAG
[ENA]
¢þ
>WENV183215670
OLQG01007938
[OLQG] human gut metagenome; faeces
2110
2027
-
Leu
TAG
[ENA]
¢þ
>WENV183280737
OLSB01011146
[OLSB] human gut metagenome; faeces
1168
1085
-
Leu
TAG
[ENA]
¢þ
>WENV183291327
OLSI01000910
[OLSI] human gut metagenome; faeces
5700
5617
-
Leu
TAG
[ENA]
¢þ
>WENV183298036
OLSM01027790
[OLSM] human gut metagenome; faeces
1127
1044
-
Leu
TAG
[ENA]
¢þ
>WENV183382959
OLYL01038008
[OLYL] human gut metagenome; feces
762
679
-
Leu
TAG
[ENA]
¢þ
>WENV183439142
OMCF01038008
[OMCF] human gut metagenome; feces
762
679
-
Leu
TAG
[ENA]
¢þ
>WENV183500373
OMGQ01008549
[OMGQ] human gut metagenome; human gut
2551
2468
-
Leu
TAG
[ENA]
¢þ
>WENV183548914
OOAY01005316
[OOAY] human gut metagenome; human gut
1054
969
-
Leu
TAG
[ENA]
¢þ
>WENV183563721
OOBX01007216
[OOBX] human gut metagenome; human gut
710
627
-
Leu
TAG
[ENA]
¢þ
>WENV183792931
PPYF01465776
[PPYF] human gut metagenome; stool from patient with Crohn's disease
916
833
-
Leu
TAG
[ENA]
¢þ
>WENV170690322
LFRM01335634
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
202
118
-
Leu
TAG
[ENA]
¢þ
>C181023455
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
357103
357020
-
Leu
TAG
-
¡û
>C181027184
CP017695
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [CP017695]
1896914
1896831
-
Leu
TAG
-
¡û
>C181068136
CP022544
Actinomycetota
Bifidobacterium pseudolongum UMB-MBP-01 [CP022544]
321884
321967
+
Leu
TAG
-
¡û
>C181071812
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
859171
859088
-
Leu
TAG
-
¡û
>C191057567
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
363354
363271
-
Leu
TAG
-
¡û
>W141523700
JGYM01000010
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
3921
4005
+
Leu
TAG
[ENA]
¡û
>C191073881
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
356917
356834
-
Leu
TAG
-
¡û
>W141523970
JGYS01000007
Actinomycetota
Bifidobacterium callitrichos DSM 23973 [JGYS]
46938
46856
-
Leu
TAG
[ENA]
¡û
>C191078843
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
1815328
1815411
+
Leu
TAG
-
¡û
>W141524656
JGZG01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
20307
20223
-
Leu
TAG
[ENA]
¡û
>W141524735
JGZH01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum [JGZH]
541052
541136
+
Leu
TAG
[ENA]
¡û
>C191144134
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
357050
356967
-
Leu
TAG
-
¡û
>W141559174
JHWN01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JHWN]
69977
69893
-
Leu
TAG
[ENA]
¡û
>W1910179776
BJKG01000010
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
265580
265663
+
Leu
TAG
[ENA]
¡û
>W1910179816
BJKH01000011
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
947341
947424
+
Leu
TAG
[ENA]
¡û
>W1910179846
BJKI01000001
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
265591
265674
+
Leu
TAG
[ENA]
¡û
>W1910342697
FTRE01000001
Actinomycetota
Bifidobacterium animalis [FTRE]
74465
74382
-
Leu
TAG
[ENA]
¡û
>W1910343316
FTRP01000001
Actinomycetota
Bifidobacterium animalis [FTRP]
74466
74383
-
Leu
TAG
[ENA]
¡û
>C141002678
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
357206
357122
-
Leu
TAG
[Ensembl]
¡û
>C09101025
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
356834
356750
-
Leu
TAG
[Ensembl]
¡û
>C09101074
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
357047
356963
-
Leu
TAG
[Ensembl]
¡û
>C09101122
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
357048
356964
-
Leu
TAG
[Ensembl]
¡û
>W1910814899
MVOH01000007
Actinomycetota
Bifidobacterium criceti 71 [MVOH]
144154
144072
-
Leu
TAG
[ENA]
¡û
>W1910910816
NHMR02000001
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
1125269
1125352
+
Leu
TAG
[ENA]
¡û
>W1910923014
NIGQ01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
746164
746247
+
Leu
TAG
[ENA]
¡û
>W1910923063
NIGR01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
746164
746247
+
Leu
TAG
[ENA]
¡û
>W1911410731
NWTW01000049
Actinomycetota
Bifidobacterium callitrichos UMA51804 [NWTW]
6349
6431
+
Leu
TAG
[ENA]
¡û
>W1911410780
NWTX01000016
Actinomycetota
Bifidobacterium callitrichos UMA51805 [NWTX]
45160
45078
-
Leu
TAG
[ENA]
¡û
>W1911768195
QXGI01000002
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
453384
453302
-
Leu
TAG
[ENA]
¡û
>W1810049131
PCGZ01000007
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1524B [PCGZ]
31486
31403
-
Leu
TAG
[ENA]
¡û
>W1810049154
PCHA01000014
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1747B [PCHA]
72026
72111
+
Leu
TAG
[ENA]
¡û
>W1810049207
PCHB01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1744B [PCHB]
112364
112281
-
Leu
TAG
[ENA]
¡û
>W1810049260
PCHC01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1619B [PCHC]
70277
70360
+
Leu
TAG
[ENA]
¡û
>W1810049312
PCHD01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1734B [PCHD]
150019
150102
+
Leu
TAG
[ENA]
¡û
>W1810049363
PCHE01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1691B [PCHE]
112256
112173
-
Leu
TAG
[ENA]
¡û
>W1810049441
PCHF01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1595B [PCHF]
151572
151655
+
Leu
TAG
[ENA]
¡û
>W1810049465
PCHG01000009
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1549B [PCHG]
9713
9796
+
Leu
TAG
[ENA]
¡û
>W1810049515
PCHH01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1520B [PCHH]
442677
442760
+
Leu
TAG
[ENA]
¡û
>W1810049567
PCHI01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1370B [PCHI]
200109
200192
+
Leu
TAG
[ENA]
¡û
>W1810084958
PESQ01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
217237
217320
+
Leu
TAG
[ENA]
¡û
>W1810121978
PHUS01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
62187
62270
+
Leu
TAG
[ENA]
¡û
>W1810541584
QDIK01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
23227
23144
-
Leu
TAG
[ENA]
¡û
>W1810541639
QDIL01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
23203
23120
-
Leu
TAG
[ENA]
¡û
>W1810541726
QDIN01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
416067
416150
+
Leu
TAG
[ENA]
¡û
>W1810541774
QDIO01000018
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
14907
14990
+
Leu
TAG
[ENA]
¡û
>W1810541833
QDIP01000002
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
23208
23125
-
Leu
TAG
[ENA]
¡û
>W1810541933
QDIR01000002
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
23201
23118
-
Leu
TAG
[ENA]
¡û
>W1810542016
QDIT01000001
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
947307
947390
+
Leu
TAG
[ENA]
¡û
>W1810542065
QDIU01000001
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
947308
947391
+
Leu
TAG
[ENA]
¡û
>W1810542141
QDIV01000116
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
8474
8557
+
Leu
TAG
[ENA]
¡û
>W1810542310
QDIZ01000004
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
23200
23117
-
Leu
TAG
[ENA]
¡û
>W1810813791
QRZV01000001
Actinomycetota
Bifidobacterium pseudolongum AF13-3LB [QRZV]
350757
350842
+
Leu
TAG
[ENA]
¡û
>W1810837819
QSSU01000003
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
7675
7592
-
Leu
TAG
[ENA]
¡û
>W1810839881
QSUF01000002
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
217231
217314
+
Leu
TAG
[ENA]
¡û
>C151024222
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
353338
353423
+
Leu
TAG
[Ensembl]
¡û
>C151026497
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
356881
356797
-
Leu
TAG
[Ensembl]
¡û
>C151033718
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
357406
357322
-
Leu
TAG
[Ensembl]
¡û
>C151042240
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
356882
356798
-
Leu
TAG
[Ensembl]
¡û
>C151068811
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
357049
356965
-
Leu
TAG
[Ensembl]
¡û
>C10101327
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
992530
992446
-
Leu
TAG
[Ensembl]
¡û
>C10101378
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
357049
356965
-
Leu
TAG
[Ensembl]
¡û
>C11101934
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
357045
356961
-
Leu
TAG
[Ensembl]
¡û
>C11101983
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
357059
356975
-
Leu
TAG
[Ensembl]
¡û
>C121002641
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
363474
363390
-
Leu
TAG
[Ensembl]
¡û
>C121013677
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
357046
356962
-
Leu
TAG
[Ensembl]
¡û
>C121013726
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
357048
356964
-
Leu
TAG
[Ensembl]
¡û
>C161087465
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
815229
815145
-
Leu
TAG
[Ensembl]
¡û
>W1610027691
AWFK01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
451052
450968
-
Leu
TAG
[ENA]
¡û
>W1610027767
AWFL01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
23081
22997
-
Leu
TAG
[ENA]
¡û
>W1610027814
AWFM01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
23091
23007
-
Leu
TAG
[ENA]
¡û
>W1610027869
AWFN01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
8828
8912
+
Leu
TAG
[ENA]
¡û
>W1610027928
AWFO01000011
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
3879
3963
+
Leu
TAG
[ENA]
¡û
>W1610027959
AWFP01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
274363
274447
+
Leu
TAG
[ENA]
¡û
>W1610027998
AWFQ01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
420054
419970
-
Leu
TAG
[ENA]
¡û
>W1610058896
BCAE01000160
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
2460
2544
+
Leu
TAG
[ENA]
¡û
>W1610083105
CBUQ010000004
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
76641
76725
+
Leu
TAG
[ENA]
¡û
>W121031667
AHGW01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
418924
418840
-
Leu
TAG
[ENA]
¡û
>C131012166
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
356906
356822
-
Leu
TAG
[Ensembl]
¡û
>W1610519008
JDTV01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
49739
49823
+
Leu
TAG
[ENA]
¡û
>W1610519198
JDTZ01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
11681
11597
-
Leu
TAG
[ENA]
¡û
>W1610519500
JDUG01000012
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
1251
1167
-
Leu
TAG
[ENA]
¡û
>W1610520203
JDUV01000018
Actinomycetota
Bifidobacterium callitrichos DSM 23973 [JDUV]
46595
46513
-
Leu
TAG
[ENA]
¡û
>W1710023899
AWFK01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
451052
450968
-
Leu
TAG
[ENA]
¡û
>W1710023979
AWFN01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
8828
8912
+
Leu
TAG
[ENA]
¡û
>W1710024038
AWFO01000011
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
3879
3963
+
Leu
TAG
[ENA]
¡û
>W1710055655
BCAE01000160
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
2460
2544
+
Leu
TAG
[ENA]
¡û
>W1710088225
CBUQ010000004
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
76641
76725
+
Leu
TAG
[ENA]
¡û
>W1710614463
JDTV01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
49739
49823
+
Leu
TAG
[ENA]
¡û
>W1710614653
JDTZ01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
11681
11597
-
Leu
TAG
[ENA]
¡û
>W1710614955
JDUG01000012
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
1251
1167
-
Leu
TAG
[ENA]
¡û
>W1710615616
JDUV01000018
Actinomycetota
Bifidobacterium callitrichos DSM 23973 [JDUV]
46595
46513
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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Direction
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Decision
Download Sequence
Representative sequence of each cluster
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