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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117891 (53 seq.)
>W1711187727
LWPS01000065
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
56027
55943
-
Leu
TAG
[ENA]
¡û
>W1711294012
LZZB01000012
Bacillota
Clostridium beijerinckii [LZZB]
51650
51734
+
Leu
TAG
[ENA]
¡û
>W1711294080
LZZC01000047
Bacillota
Clostridium beijerinckii [LZZC]
39684
39768
+
Leu
TAG
[ENA]
¡û
>W1711294111
LZZD01000014
Bacillota
Clostridium beijerinckii [LZZD]
32800
32716
-
Leu
TAG
[ENA]
¡û
>W1711294159
LZZE01000015
Bacillota
Clostridium beijerinckii [LZZE]
32731
32647
-
Leu
TAG
[ENA]
¡û
>W1711294212
LZZF01000029
Bacillota
Clostridium beijerinckii [LZZF]
31120
31036
-
Leu
TAG
[ENA]
¡û
>W1711294232
LZZG01000015
Bacillota
Clostridium beijerinckii [LZZG]
29341
29257
-
Leu
TAG
[ENA]
¡û
>W1711294285
LZZH01000012
Bacillota
Clostridium beijerinckii [LZZH]
55527
55611
+
Leu
TAG
[ENA]
¡û
>W1711294313
LZZI01000029
Bacillota
Clostridium beijerinckii [LZZI]
8683
8767
+
Leu
TAG
[ENA]
¡û
>W1711294367
LZZJ01000077
Bacillota
Clostridium beijerinckii [LZZJ]
55347
55431
+
Leu
TAG
[ENA]
¡û
>W1711294407
LZZK01000001
Bacillota
Clostridium beijerinckii [LZZK]
169082
169166
+
Leu
TAG
[ENA]
¡û
>W1711320449
MBAF01000021
Bacillota
Clostridium beijerinckii [MBAF]
250470
250386
-
Leu
TAG
[ENA]
¡û
>W131156827
AQQF01000165
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
82167
82083
-
Leu
TAG
[ENA]
¡û
>W131156887
AQQG01000126
Bacillota
Clostridium diolis DSM 15410 [AQQG]
32914
32830
-
Leu
TAG
[ENA]
¡û
>W131232776
AUJN01000011
Bacillota
Clostridium butyricum AGR2140 [AUJN]
59802
59718
-
Leu
TAG
[ENA]
¡û
>W1711794360
MWMH01000008
Bacillota
Clostridium beijerinckii [MWMH]
149963
150047
+
Leu
TAG
[ENA]
¡û
>W1712096553
NHZR01000011
Bacillota
Clostridium diolis [NHZR]
109524
109608
+
Leu
TAG
[ENA]
¡û
>C171045817
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
315048
315132
+
Leu
TAG
-
¡û
>C171045982
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
343569
343653
+
Leu
TAG
-
¡û
>C005056
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
354960
355044
+
Leu
TAG
[Ensembl]
¡û
>w011487
AALO01000021
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
29048
29132
+
Leu
TAG
[ENA]
¡û
>WENV180232167
OBCO01000158
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
95252
95333
+
Leu
TAG
[ENA]
¢þ
>WENV180233027
OBCP01000068
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
207550
207631
+
Leu
TAG
[ENA]
¢þ
>WENV180413518
OBVB01003457
[OBVB] human gut metagenome; faeces
2018
1934
-
Leu
TAG
[ENA]
¢þ
>WENV180569568
OCLR01000184
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
70376
70457
+
Leu
TAG
[ENA]
¢þ
>WENV180570472
OCLS01000143
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
95252
95333
+
Leu
TAG
[ENA]
¢þ
>WENV180571385
OCLT01000072
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
207606
207687
+
Leu
TAG
[ENA]
¢þ
>WENV180573632
OCLW01000069
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
207606
207687
+
Leu
TAG
[ENA]
¢þ
>WENV180639699
OCRL01000074
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
207606
207687
+
Leu
TAG
[ENA]
¢þ
>WENV180640821
OCRM01000212
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
58723
58804
+
Leu
TAG
[ENA]
¢þ
>W141083122
AUPH01001220
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
1800
1884
+
Leu
TAG
[ENA]
¡û
>WENV181805155
OGSH01001003
[OGSH] human gut metagenome; fecal sample 5 from infant 6
5179
5095
-
Leu
TAG
[ENA]
¢þ
>WENV181811006
OGSX01000977
[OGSX] human gut metagenome; fecal sample 1 from infant 8
808
724
-
Leu
TAG
[ENA]
¢þ
>WENV181811118
OGSY01000008
[OGSY] human gut metagenome; fecal sample 5 from infant 8
117177
117261
+
Leu
TAG
[ENA]
¢þ
>WENV181811574
OGSZ01000007
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
109327
109411
+
Leu
TAG
[ENA]
¢þ
>W141200260
AYXR01000015
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
2980
2896
-
Leu
TAG
[ENA]
¡û
>WENV182952848
OKVX01000124
[OKVX] human gut metagenome; human gut
8548
8464
-
Leu
TAG
[ENA]
¢þ
>WENV183780953
PPYF01188692
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4169
4085
-
Leu
TAG
[ENA]
¢þ
>C181176722
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1324804
1324888
+
Leu
TAG
-
¡û
>C181203621
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
315625
315709
+
Leu
TAG
-
¡û
>W09132828
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
552408
552324
-
Leu
TAG
[ENA]
¡û
>W1810147499
PIQP01000027
Bacillota
Clostridium beijerinckii WB [PIQP]
8826
8742
-
Leu
TAG
[ENA]
¡û
>W1810250485
PQCR01000011
Bacillota
Clostridium sp. 2-1 [PQCR]
31415
31331
-
Leu
TAG
[ENA]
¡û
>W1810271460
PRKY01000012
Bacillota
Clostridium diolis WST [PRKY]
102764
102680
-
Leu
TAG
[ENA]
¡û
>C151012339
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
354960
355044
+
Leu
TAG
[Ensembl]
¡û
>C151088335
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5883594
5883510
-
Leu
TAG
-
¡û
>W1511501389
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3451341
3451257
-
Leu
TAG
[ENA]
¡û
>C161023444
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
316298
316382
+
Leu
TAG
[Ensembl]
¡û
>C161055876
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
328308
328392
+
Leu
TAG
-
¡û
>W121102378
AKWA01000085
Bacillota
Clostridium beijerinckii G117 [AKWA]
8826
8742
-
Leu
TAG
[ENA]
¡û
>W1610627663
LIDW01000032
Bacillota
Clostridium butyricum [LIDW]
22269
22185
-
Leu
TAG
[ENA]
¡û
>W1611062472
MBAF01000021
Bacillota
Clostridium beijerinckii [MBAF]
250470
250386
-
Leu
TAG
[ENA]
¡û
>W1710758790
LIDW01000032
Bacillota
Clostridium butyricum [LIDW]
22269
22185
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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