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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117905 (17 seq.)
>W1711352944
MDDP01000010
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
479536
479450
-
Leu
TAA
[ENA]
¡û
>C171036275
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
2289530
2289444
-
Leu
TAA
-
¡û
>w013991
AAOC01000001
Bacteroidota
Maribacter sp. HTCC2170 HTCC2170 [AAOC]
188145
188233
+
Leu
TAA
[ENA]
¡û
>W141067183
ARZX01000001
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
335327
335413
+
Leu
TAA
[ENA]
¡û
>WENV183704056
PDWI01000014
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
73654
73738
+
Leu
TAA
[ENA]
¢þ
>WENV183719153
PDWJ01010188
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2694
2778
+
Leu
TAA
[ENA]
¢þ
>WENV170023074
BCQK01119148
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
122
208
+
Leu
TAA
[ENA]
¢þ
>WENV170024202
BCQL01029938
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
471
557
+
Leu
TAA
[ENA]
¢þ
>C191127747
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2179692
2179776
+
Leu
TAA
-
¡û
>W141562340
JHZC01000002
Bacteroidota
Maribacter antarcticus DSM 21422 [JHZC]
48220
48134
-
Leu
TAA
[ENA]
¡û
>W1910545616
FZLT01000045
Bacteroidota
Cellulophaga lytica [FZLT]
31655
31571
-
Leu
TAA
[ENA]
¡û
>W1910693628
MDGN01000034
Bacteroidota
Maribacter sp. 4U21 [MDGN]
165368
165452
+
Leu
TAA
[ENA]
¡û
>W1810121568
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
240071
240155
+
Leu
TAA
[ENA]
¡û
>C151046356
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
2121378
2121292
-
Leu
TAA
[Ensembl]
¡û
>C10106842
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
890646
890730
+
Leu
TAA
[Ensembl]
¡û
>C11105687
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
2162982
2162896
-
Leu
TAA
[Ensembl]
¡û
>W1710579955
FPIY01000002
Bacteroidota
Cellulophaga fucicola [FPIY]
557700
557786
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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