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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118007 (62 seq.)
>W1710787527
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
50627
50713
+
Leu
CAA
[ENA]
¡û
>W131155612
AQOS01000019
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
45506
45420
-
Leu
CAA
[ENA]
¡û
>W131177920
ARLD01000087
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
36059
35973
-
Leu
CAA
[ENA]
¡û
>W131231963
AUIW01000012
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
21511
21597
+
Leu
CAA
[ENA]
¡û
>C025916
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
98545
98459
-
Leu
CAA
[Ensembl]
¡û
>C025954
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
453689
453603
-
Leu
CAA
[Ensembl]
¡û
>WENV180014251
FPIC01115608
[FPIC] soil metagenome; Soil
8
93
+
Leu
CAA
[ENA]
¢þ
>W141080498
ATNI01000020
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
10357
10271
-
Leu
CAA
[ENA]
¡û
>WENV181227375
OFDN01008585
[OFDN] hot springs metagenome; Water
3390
3304
-
Leu
CAA
[ENA]
¢þ
>WENV170700708
LJSS01000329
[LJSS] hot springs metagenome; water from Lobios Hot Spring
981
1067
+
Leu
CAA
[ENA]
¢þ
>C191159687
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1221540
1221454
-
Leu
CAA
-
¡û
>W141818268
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1229761
1229675
-
Leu
CAA
[ENA]
¡û
>W141818284
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1014486
1014572
+
Leu
CAA
[ENA]
¡û
>W141820368
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1542432
1542346
-
Leu
CAA
[ENA]
¡û
>W141820775
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
136208
136122
-
Leu
CAA
[ENA]
¡û
>W1911578816
PELL01000387
Deinococcota
Thermus scotoductus 39_S39 [PELL]
8006
8092
+
Leu
CAA
[ENA]
¡û
>W1911578860
PELM01000463
Deinococcota
Thermus scotoductus 38_S38 [PELM]
7921
8007
+
Leu
CAA
[ENA]
¡û
>W1911578916
PELN01000376
Deinococcota
Thermus scotoductus 37_S37 [PELN]
2744
2658
-
Leu
CAA
[ENA]
¡û
>W1911578954
PELO01000290
Deinococcota
Thermus scotoductus 35_S35 [PELO]
3560
3474
-
Leu
CAA
[ENA]
¡û
>W1911578975
PELP01000077
Deinococcota
Thermus scotoductus 34_S34 [PELP]
20143
20229
+
Leu
CAA
[ENA]
¡û
>W1911579056
PELQ01000340
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579100
PELR01000359
Deinococcota
Thermus scotoductus 32_S32 [PELR]
5462
5376
-
Leu
CAA
[ENA]
¡û
>W1911579146
PELS01000281
Deinococcota
Thermus scotoductus 31_S31 [PELS]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579194
PELT01000275
Deinococcota
Thermus scotoductus 30_S30 [PELT]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579253
PELU01000457
Deinococcota
Thermus scotoductus 29_S29 [PELU]
2744
2658
-
Leu
CAA
[ENA]
¡û
>W1911579300
PELV01000402
Deinococcota
Thermus scotoductus 28_S28 [PELV]
348
262
-
Leu
CAA
[ENA]
¡û
>W1911579310
PELW01000055
Deinococcota
Thermus scotoductus 27_S27 [PELW]
20188
20274
+
Leu
CAA
[ENA]
¡û
>W1911579385
PELX01000305
Deinococcota
Thermus scotoductus 26_S26 [PELX]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579442
PELY01000415
Deinococcota
Thermus scotoductus 25_S25 [PELY]
2322
2236
-
Leu
CAA
[ENA]
¡û
>W1911579479
PELZ01000433
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
2739
2653
-
Leu
CAA
[ENA]
¡û
>W1911579518
PEMA01000285
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579568
PEMB01000316
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579619
PEMC01000297
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579668
PEMD01000281
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579724
PEME01000323
Deinococcota
Thermus scotoductus 19_S19 [PEME]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911579751
PEMF01000115
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
440
526
+
Leu
CAA
[ENA]
¡û
>W1911579791
PEMG01000050
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
3000
3086
+
Leu
CAA
[ENA]
¡û
>W1911579863
PEMH01000355
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
2975
2889
-
Leu
CAA
[ENA]
¡û
>W1911579916
PEMI01000405
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
2734
2648
-
Leu
CAA
[ENA]
¡û
>W1911579925
PEMJ01000011
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
3555
3469
-
Leu
CAA
[ENA]
¡û
>W1911579997
PEMK01000280
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911580044
PEML01000285
Deinococcota
Thermus scotoductus 12_S12 [PEML]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911580094
PEMM01000259
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911580130
PEMN01000061
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
3560
3474
-
Leu
CAA
[ENA]
¡û
>W1911580206
PEMO01000399
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
7863
7949
+
Leu
CAA
[ENA]
¡û
>W1911580250
PEMP01000409
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
7863
7949
+
Leu
CAA
[ENA]
¡û
>W1911580293
PEMQ01000276
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
3556
3470
-
Leu
CAA
[ENA]
¡û
>W1911580346
PEMR01000258
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911580365
PEMS01000099
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
1851
1765
-
Leu
CAA
[ENA]
¡û
>W1911580429
PEMT01000293
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911580485
PEMU01000292
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
11077
11163
+
Leu
CAA
[ENA]
¡û
>W1911580533
PEMV01000308
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
9015
9101
+
Leu
CAA
[ENA]
¡û
>W1911580584
PEMW01000446
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
8073
8159
+
Leu
CAA
[ENA]
¡û
>W1810268419
PRDA01000001
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
8615
8701
+
Leu
CAA
[ENA]
¡û
>W1810605084
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
43143
43057
-
Leu
CAA
[ENA]
¡û
>C11123066
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1852600
1852514
-
Leu
CAA
[Ensembl]
¡û
>C11123207
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
457769
457683
-
Leu
CAA
[Ensembl]
¡û
>C121009734
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1483222
1483308
+
Leu
CAA
[Ensembl]
¡û
>W1610045313
BBBL01000065
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2783
2869
+
Leu
CAA
[ENA]
¡û
>W1610651382
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
50627
50713
+
Leu
CAA
[ENA]
¡û
>W1710042154
BBBL01000065
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2783
2869
+
Leu
CAA
[ENA]
¡û
>W1710514638
FNBC01000006
Deinococcota
Thermus arciformis [FNBC]
62429
62515
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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