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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118104 (128 seq.)
>W1710888788
LMZZ01000022
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
396711
396627
-
Leu
TAG
[ENA]
¡û
>W1711308651
MAQD01000001
Gammaproteobacteria
Haemophilus parainfluenzae [MAQD]
433354
433270
-
Leu
TAG
[ENA]
¡û
>W1711515653
MLHS01000011
Gammaproteobacteria
Rodentibacter sp. Ppn85 [MLHS]
18223
18307
+
Leu
TAG
[ENA]
¡û
>W1711572059
MNAV01000003
Gammaproteobacteria
Glaesserella parasuis [MNAV]
78628
78544
-
Leu
TAG
[ENA]
¡û
>W1711712307
MTBV01000040
Gammaproteobacteria
Actinobacillus suis [MTBV]
52874
52958
+
Leu
TAG
[ENA]
¡û
>W1711766044
MUYA01000018
Gammaproteobacteria
Haemophilus paracuniculus [MUYA]
39841
39925
+
Leu
TAG
[ENA]
¡û
>W1711766172
MUYD01000011
Gammaproteobacteria
[Haemophilus] ducreyi [MUYD]
60334
60418
+
Leu
TAG
[ENA]
¡û
>C171106527
CP020411
Gammaproteobacteria
Haemophilus influenzae FDAARGOS_199 [CP020411]
394918
395002
+
Leu
TAG
-
¡û
>C000974
CP000569
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 5b str. L20 [CP000569]
1315776
1315692
-
Leu
TAG
[Ensembl]
¡û
>W131170473
ARFN01000046
Gammaproteobacteria
Actinobacillus capsulatus DSM 19761 [ARFN]
2849
2765
-
Leu
TAG
[ENA]
¡û
>C010466
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
329856
329940
+
Leu
TAG
[Ensembl]
¡û
>w024965
AAZD01000001
Gammaproteobacteria
Haemophilus influenzae 22.1-21 [AAZD]
65114
65028
-
Leu
TAG
[ENA]
¡û
>WENV180178288
OAWH01000952
[OAWH] human gut metagenome; faeces
1938
1854
-
Leu
TAG
[ENA]
¢þ
>WENV180204006
OBAG01161521
[OBAG] human gut metagenome; human gut
202
118
-
Leu
TAG
[ENA]
¢þ
>WENV180551657
OCJG01008676
[OCJG] human oral metagenome; human oral
85
1
-
Leu
TAG
[ENA]
¢þ
>WENV180623071
OCQD01002711
[OCQD] human gut metagenome; Infant 1 DOL 21 gut
124
40
-
Leu
TAG
[ENA]
¢þ
>WENV180718811
ODGI01000004
[ODGI] human metagenome; G_DNA_Buccal mucosa
26920
27004
+
Leu
TAG
[ENA]
¢þ
>WENV180721948
ODGL01035236
[ODGL] human metagenome; G_DNA_Subgingival plaque
176
260
+
Leu
TAG
[ENA]
¢þ
>WENV180782427
ODIQ01000010
[ODIQ] human metagenome; G_DNA_Tongue dorsum
80622
80706
+
Leu
TAG
[ENA]
¢þ
>WENV180819264
ODJR01000027
[ODJR] human metagenome; G_DNA_Tongue dorsum
81017
81101
+
Leu
TAG
[ENA]
¢þ
>WENV180831346
ODKB01107669
[ODKB] human metagenome; G_DNA_Tongue dorsum
90
6
-
Leu
TAG
[ENA]
¢þ
>WENV180842658
ODKM01112408
[ODKM] human metagenome; G_DNA_Buccal mucosa
85
169
+
Leu
TAG
[ENA]
¢þ
>WENV180895983
ODNI01000010
[ODNI] human metagenome; G_DNA_Tongue dorsum
125569
125485
-
Leu
TAG
[ENA]
¢þ
>WENV180914797
ODSZ01012495
[ODSZ] human metagenome; G_DNA_Buccal mucosa
260
344
+
Leu
TAG
[ENA]
¢þ
>WENV180986445
ODVK01000010
[ODVK] human metagenome; G_DNA_Supragingival plaque
140565
140481
-
Leu
TAG
[ENA]
¢þ
>WENV181006706
ODWA01107604
[ODWA] human metagenome; G_DNA_Buccal mucosa
188
104
-
Leu
TAG
[ENA]
¢þ
>WENV181027881
ODXD01094123
[ODXD] human metagenome; G_DNA_Buccal mucosa
85
169
+
Leu
TAG
[ENA]
¢þ
>WENV181073221
OEAO01000034
[OEAO] human metagenome; G_DNA_Tongue dorsum
74754
74838
+
Leu
TAG
[ENA]
¢þ
>WENV181077997
OEAQ01000039
[OEAQ] human metagenome; G_DNA_Buccal mucosa
8155
8239
+
Leu
TAG
[ENA]
¢þ
>WENV181085540
OEAX01017389
[OEAX] human metagenome; G_DNA_Tongue dorsum
1055
971
-
Leu
TAG
[ENA]
¢þ
>WENV181113003
OEEL01008345
[OEEL] human metagenome; G_DNA_Tongue dorsum
1200
1116
-
Leu
TAG
[ENA]
¢þ
>WENV181158195
OEIH01000007
[OEIH] human metagenome; G_DNA_Supragingival plaque
165066
165150
+
Leu
TAG
[ENA]
¢þ
>WENV181462731
OGEN01032304
[OGEN] metagenome; Human gut stool
7
91
+
Leu
TAG
[ENA]
¢þ
>WENV181467724
OGER01032645
[OGER] metagenome; Human gut stool
634
718
+
Leu
TAG
[ENA]
¢þ
>WENV181487812
OGFP01002366
[OGFP] metagenome; Human gut stool
1096
1012
-
Leu
TAG
[ENA]
¢þ
>WENV181561482
OGJD01004364
[OGJD] metagenome; Human gut stool
628
712
+
Leu
TAG
[ENA]
¢þ
>WENV181935313
OGYU01002835
[OGYU] human gut metagenome; faeces
2593
2509
-
Leu
TAG
[ENA]
¢þ
>WENV182406672
OIFA01000055
[OIFA] human gut metagenome; stool
16766
16682
-
Leu
TAG
[ENA]
¢þ
>WENV182408121
OIFE01000920
[OIFE] human gut metagenome; human gut
4990
4906
-
Leu
TAG
[ENA]
¢þ
>WENV182444055
OIKQ01001150
[OIKQ] human gut metagenome; human gut
2131
2215
+
Leu
TAG
[ENA]
¢þ
>C08000920
CP000687
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 3 str. JL03 [CP000687]
1280990
1280909
-
Leu
TAG
[Ensembl]
¡û
>WENV182796924
OJSS01000243
[OJSS] human gut metagenome; human gut
3877
3961
+
Leu
TAG
[ENA]
¢þ
>WENV182812897
OJXW01000020
[OJXW] human gut metagenome; human gut
29979
30063
+
Leu
TAG
[ENA]
¢þ
>WENV182827020
OKCW01002896
[OKCW] human gut metagenome; human gut
507
591
+
Leu
TAG
[ENA]
¢þ
>WENV183166430
OLOY01000029
[OLOY] human gut metagenome; faeces
67812
67728
-
Leu
TAG
[ENA]
¢þ
>WENV183238013
OLQY01003117
[OLQY] human gut metagenome; faeces
8633
8549
-
Leu
TAG
[ENA]
¢þ
>WENV183324569
OLVY01022183
[OLVY] human gut metagenome; feces
1241
1325
+
Leu
TAG
[ENA]
¢þ
>WENV183492293
OMGH01007459
[OMGH] human gut metagenome; human gut
1342
1426
+
Leu
TAG
[ENA]
¢þ
>WENV183782806
PPYF01220039
[PPYF] human gut metagenome; stool from patient with Crohn's disease
18125
18209
+
Leu
TAG
[ENA]
¢þ
>WENV183789092
PPYF01377020
[PPYF] human gut metagenome; stool from patient with Crohn's disease
188
104
-
Leu
TAG
[ENA]
¢þ
>WENV183790199
PPYF01406132
[PPYF] human gut metagenome; stool from patient with Crohn's disease
172
88
-
Leu
TAG
[ENA]
¢þ
>W141485483
JFZK01000018
Gammaproteobacteria
Haemophilus influenzae [JFZK]
426705
426621
-
Leu
TAG
[ENA]
¡û
>W141485569
JFZM01000005
Gammaproteobacteria
Haemophilus influenzae [JFZM]
922
838
-
Leu
TAG
[ENA]
¡û
>C181055872
CP022037
Gammaproteobacteria
[Haemophilus] ducreyi FDAARGOS_297 [CP022037]
361222
361138
-
Leu
TAG
-
¡û
>C181197597
CP031240
Gammaproteobacteria
Haemophilus haemolyticus M19345 [CP031240]
1454248
1454332
+
Leu
TAG
-
¡û
>C181197744
CP031242
Gammaproteobacteria
Haemophilus influenzae M21460 [CP031242]
493501
493417
-
Leu
TAG
-
¡û
>C191078494
CP031691
Gammaproteobacteria
Haemophilus influenzae P615-8618 [CP031691]
1578346
1578262
-
Leu
TAG
-
¡û
>C191139201
CP035368
Gammaproteobacteria
Haemophilus parainfluenzae LC_1315_18 [CP035368]
658768
658852
+
Leu
TAG
-
¡û
>C191198781
LR134169
Gammaproteobacteria
Actinobacillus lignieresii NCTC10568 [LR134169]
1416524
1416440
-
Leu
TAG
-
¡û
>C191208988
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
706983
707065
+
Leu
TAG
-
¡û
>C191213614
LR134515
Gammaproteobacteria
Actinobacillus pleuropneumoniae NCTC10976 [LR134515]
1349504
1349420
-
Leu
TAG
-
¡û
>W1810531521
QCXP01000004
Gammaproteobacteria
Actinobacillus suis AS108/13 [QCXP]
55192
55108
-
Leu
TAG
[ENA]
¡û
>C151015362
CP006954
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-188 [CP006954]
476494
476410
-
Leu
TAG
[Ensembl]
¡û
>C151015419
CP006955
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-189 [CP006955]
520867
520783
-
Leu
TAG
[Ensembl]
¡û
>C151015454
CP006956
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-190 [CP006956]
1923880
1923964
+
Leu
TAG
[Ensembl]
¡û
>C151032804
CP007715
Gammaproteobacteria
Actinobacillus equuli subsp. equuli 19392 [CP007715]
1367177
1367093
-
Leu
TAG
[Ensembl]
¡û
>W10103963
ACSM01000002
Gammaproteobacteria
Haemophilus influenzae RdAW [ACSM]
144288
144204
-
Leu
TAG
[ENA]
¡û
>W10116718
ADOF01000051
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 4 str. M62 [ADOF]
109
25
-
Leu
TAG
[ENA]
¡û
>W10116809
ADOI01000037
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261 [ADOI]
64302
64218
-
Leu
TAG
[ENA]
¡û
>W11104747
ACSM01000002
Gammaproteobacteria
Haemophilus influenzae RdAW [ACSM]
144288
144204
-
Leu
TAG
[ENA]
¡û
>W1511204211
JMQP01000002
Gammaproteobacteria
Haemophilus influenzae 1209 [JMQP]
992702
992618
-
Leu
TAG
[ENA]
¡û
>W1511387876
JSVF01000019
Gammaproteobacteria
Actinobacillus pleuropneumoniae 1022 [JSVF]
33644
33560
-
Leu
TAG
[ENA]
¡û
>W1511388242
JSVY01000017
Gammaproteobacteria
Actinobacillus pleuropneumoniae 5651 [JSVY]
33645
33561
-
Leu
TAG
[ENA]
¡û
>W11121571
ADOF01000051
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 4 str. M62 [ADOF]
109
25
-
Leu
TAG
[ENA]
¡û
>W11121662
ADOI01000037
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261 [ADOI]
64302
64218
-
Leu
TAG
[ENA]
¡û
>W1511453269
JVEZ01000039
Gammaproteobacteria
Haemophilus influenzae 492_HINF [JVEZ]
284
200
-
Leu
TAG
[ENA]
¡û
>W1511457892
JVIR01000044
Gammaproteobacteria
Haemophilus influenzae 40_HINF [JVIR]
29897
29813
-
Leu
TAG
[ENA]
¡û
>W1511506188
JXLX01000011
Gammaproteobacteria
Haemophilus influenzae Hi322 [JXLX]
17191
17275
+
Leu
TAG
[ENA]
¡û
>W11150090
AEVG01000121
Gammaproteobacteria
Actinobacillus ureae ATCC 25976 [AEVG]
2516
2432
-
Leu
TAG
[ENA]
¡û
>W1511679711
LFFP01000010
Gammaproteobacteria
Haemophilus influenzae HI2007 [LFFP]
112921
113005
+
Leu
TAG
[ENA]
¡û
>W1511679849
LFFS01000014
Gammaproteobacteria
Haemophilus influenzae HI2116 [LFFS]
29971
29887
-
Leu
TAG
[ENA]
¡û
>C161032157
CP011218
Gammaproteobacteria
[Haemophilus] ducreyi NZS1 [CP011218]
322850
322934
+
Leu
TAG
-
¡û
>C161032207
CP011219
Gammaproteobacteria
[Haemophilus] ducreyi NZS2 [CP011219]
324440
324524
+
Leu
TAG
-
¡û
>C161032259
CP011220
Gammaproteobacteria
[Haemophilus] ducreyi NZS3 [CP011220]
324044
324128
+
Leu
TAG
-
¡û
>C161032312
CP011221
Gammaproteobacteria
[Haemophilus] ducreyi NZS4 [CP011221]
322649
322733
+
Leu
TAG
-
¡û
>C161032364
CP011222
Gammaproteobacteria
[Haemophilus] ducreyi 82-029362 [CP011222]
320156
320240
+
Leu
TAG
-
¡û
>C161032414
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
319265
319349
+
Leu
TAG
-
¡û
>C161032461
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
321171
321255
+
Leu
TAG
-
¡û
>C161032512
CP011225
Gammaproteobacteria
[Haemophilus] ducreyi HMC46 [CP011225]
317419
317503
+
Leu
TAG
-
¡û
>C161032561
CP011226
Gammaproteobacteria
[Haemophilus] ducreyi HMC56 [CP011226]
318523
318607
+
Leu
TAG
-
¡û
>C161032653
CP011227
Gammaproteobacteria
[Haemophilus] ducreyi NZV1 [CP011227]
228094
228010
-
Leu
TAG
-
¡û
>C161032658
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
311398
311482
+
Leu
TAG
-
¡û
>C161032709
CP011229
Gammaproteobacteria
[Haemophilus] ducreyi CIP 54.2 [CP011229]
308157
308241
+
Leu
TAG
-
¡û
>C161032761
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
311531
311615
+
Leu
TAG
-
¡û
>C161032813
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
311319
311403
+
Leu
TAG
-
¡û
>C161087804
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
13983
14067
+
Leu
TAG
-
¡û
>C161087868
CP015425
Gammaproteobacteria
[Haemophilus] ducreyi VAN2 [CP015425]
1070486
1070570
+
Leu
TAG
-
¡û
>C161087912
CP015426
Gammaproteobacteria
[Haemophilus] ducreyi VAN3 [CP015426]
518187
518271
+
Leu
TAG
-
¡û
>C161087978
CP015427
Gammaproteobacteria
[Haemophilus] ducreyi VAN4 [CP015427]
1380941
1380857
-
Leu
TAG
-
¡û
>C161088040
CP015428
Gammaproteobacteria
[Haemophilus] ducreyi VAN5 [CP015428]
676929
676845
-
Leu
TAG
-
¡û
>C161088050
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
47191
47275
+
Leu
TAG
-
¡û
>C161088138
CP015430
Gammaproteobacteria
[Haemophilus] ducreyi GHA2 [CP015430]
688912
688828
-
Leu
TAG
-
¡û
>C161088152
CP015431
Gammaproteobacteria
[Haemophilus] ducreyi GHA3 [CP015431]
351842
351926
+
Leu
TAG
-
¡û
>C161088220
CP015432
Gammaproteobacteria
[Haemophilus] ducreyi GHA5 [CP015432]
1483189
1483105
-
Leu
TAG
-
¡û
>C161088257
CP015433
Gammaproteobacteria
[Haemophilus] ducreyi GHA8 [CP015433]
533321
533405
+
Leu
TAG
-
¡û
>C161088311
CP015434
Gammaproteobacteria
[Haemophilus] ducreyi GHA9 [CP015434]
927647
927731
+
Leu
TAG
-
¡û
>W1610295360
FFIU01000004
Gammaproteobacteria
Haemophilus influenzae [FFIU]
59296
59212
-
Leu
TAG
[ENA]
¡û
>C131006030
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
1932571
1932655
+
Leu
TAG
[Ensembl]
¡û
>W1610516328
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
795261
795177
-
Leu
TAG
[ENA]
¡û
>W1610545022
JTJL01000015
Gammaproteobacteria
Gallibacterium salpingitidis [JTJL]
14730
14646
-
Leu
TAG
[ENA]
¡û
>W1610545064
JTJM01000010
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJM]
132876
132960
+
Leu
TAG
[ENA]
¡û
>W1610545339
JTJR01000035
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJR]
152263
152347
+
Leu
TAG
[ENA]
¡û
>W1610545365
JTJS01000023
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJS]
12725
12641
-
Leu
TAG
[ENA]
¡û
>W1610545424
JTJT01000024
Gammaproteobacteria
Gallibacterium salpingitidis [JTJT]
33146
33062
-
Leu
TAG
[ENA]
¡û
>W1610545457
JTJU01000008
Gammaproteobacteria
Gallibacterium salpingitidis [JTJU]
54455
54539
+
Leu
TAG
[ENA]
¡û
>W1610749166
LMZZ01000022
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
396711
396627
-
Leu
TAG
[ENA]
¡û
>W1611056308
MAQD01000001
Gammaproteobacteria
Haemophilus parainfluenzae [MAQD]
433354
433270
-
Leu
TAG
[ENA]
¡û
>W1710295994
FFIU01000004
Gammaproteobacteria
Haemophilus influenzae [FFIU]
59296
59212
-
Leu
TAG
[ENA]
¡û
>W1710555111
FOJC01000003
Gammaproteobacteria
[Haemophilus] ducreyi [FOJC]
128430
128346
-
Leu
TAG
[ENA]
¡û
>W1710605390
FWWV01000046
Gammaproteobacteria
Pasteurella testudinis DSM 23072 [FWWV]
48786
48702
-
Leu
TAG
[ENA]
¡û
>W1710611670
JACI01000002
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
795261
795177
-
Leu
TAG
[ENA]
¡û
>W1710648153
JTJL01000015
Gammaproteobacteria
Gallibacterium salpingitidis [JTJL]
14730
14646
-
Leu
TAG
[ENA]
¡û
>W1710648195
JTJM01000010
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJM]
132876
132960
+
Leu
TAG
[ENA]
¡û
>W1710648470
JTJR01000035
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJR]
152263
152347
+
Leu
TAG
[ENA]
¡û
>W1710648496
JTJS01000023
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJS]
12725
12641
-
Leu
TAG
[ENA]
¡û
>W1710648555
JTJT01000024
Gammaproteobacteria
Gallibacterium salpingitidis [JTJT]
33146
33062
-
Leu
TAG
[ENA]
¡û
>W1710648588
JTJU01000008
Gammaproteobacteria
Gallibacterium salpingitidis [JTJU]
54455
54539
+
Leu
TAG
[ENA]
¡û
>W1710752730
LHSM01000021
Gammaproteobacteria
Haemophilus influenzae [LHSM]
114315
114399
+
Leu
TAG
[ENA]
¡û
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Representative sequence of each cluster
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