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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118181 (65 seq.)
>W1710860590
LMCZ01000042
Alphaproteobacteria
Rhizobium sp. Root1204 [LMCZ]
60104
60020
-
Leu
CAA
[ENA]
¡û
>W1710861530
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
449957
450041
+
Leu
CAA
[ENA]
¡û
>W1710863252
LMEY01000027
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
60077
59993
-
Leu
CAA
[ENA]
¡û
>W1710863376
LMFB01000019
Alphaproteobacteria
Rhizobium sp. Root483D2 [LMFB]
502155
502239
+
Leu
CAA
[ENA]
¡û
>W1710864803
LMGD01000022
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
27732
27648
-
Leu
CAA
[ENA]
¡û
>W1710867387
LMIF01000029
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
66890
66806
-
Leu
CAA
[ENA]
¡û
>W1710868581
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
449887
449971
+
Leu
CAA
[ENA]
¡û
>W1710877581
LMQF01000026
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
66455
66371
-
Leu
CAA
[ENA]
¡û
>W1710877619
LMQG01000019
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
66562
66478
-
Leu
CAA
[ENA]
¡û
>W1710878806
LMRG01000011
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
66700
66616
-
Leu
CAA
[ENA]
¡û
>W1711326002
MBEY01000018
Alphaproteobacteria
Agrobacterium vitis [MBEY]
270547
270631
+
Leu
CAA
[ENA]
¡û
>W1711326128
MBFA01000073
Alphaproteobacteria
Agrobacterium vitis [MBFA]
45994
45910
-
Leu
CAA
[ENA]
¡û
>WENV181385542
OFRI01118209
[OFRI] wastewater metagenome; Exp Tend VB 90WW
167
83
-
Leu
CAA
[ENA]
¢þ
>WENV182947971
OKVN01000697
[OKVN] human gut metagenome; human gut
10866
10782
-
Leu
CAA
[ENA]
¢þ
>WENV183734352
PJTZ01003021
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1717
1801
+
Leu
CAA
[ENA]
¢þ
>WENV171003561
NNBU01000462
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
51514
51598
+
Leu
CAA
[ENA]
¢þ
>C191035813
CP025512
Alphaproteobacteria
Neorhizobium sp. SOG26 [CP025512]
2565551
2565635
+
Leu
CAA
-
¡û
>C191072656
CP030827
Alphaproteobacteria
Neorhizobium sp. NCHU2750 [CP030827]
3444888
3444972
+
Leu
CAA
-
¡û
>W141712211
JMQK01000003
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
16793
16877
+
Leu
CAA
[ENA]
¡û
>W141739444
JNNU01000006
Alphaproteobacteria
Neorhizobium vignae [JNNU]
358272
358188
-
Leu
CAA
[ENA]
¡û
>W141776090
JOKI01000007
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
188816
188732
-
Leu
CAA
[ENA]
¡û
>W141776133
JOKJ01000004
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
188816
188732
-
Leu
CAA
[ENA]
¡û
>W141816026
JQJO01000007
Alphaproteobacteria
Rhizobium sp. OK665 [JQJO]
50393
50309
-
Leu
CAA
[ENA]
¡û
>W141819293
JQME01000021
Alphaproteobacteria
Rhizobium sp. CF258 [JQME]
48038
47954
-
Leu
CAA
[ENA]
¡û
>W141821334
JQNM01000021
Alphaproteobacteria
Rhizobium sp. YR295 [JQNM]
8302
8386
+
Leu
CAA
[ENA]
¡û
>W1810346005
PVBF01000013
Alphaproteobacteria
Neorhizobium tomejilense T20_22 [PVBF]
45563
45647
+
Leu
CAA
[ENA]
¡û
>W1810346039
PVBG01000010
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
165118
165034
-
Leu
CAA
[ENA]
¡û
>W1810346091
PVBH01000014
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
149234
149150
-
Leu
CAA
[ENA]
¡û
>W1810346145
PVBI01000012
Alphaproteobacteria
Neorhizobium sp. T25_13 [PVBI]
112724
112640
-
Leu
CAA
[ENA]
¡û
>W1810346193
PVBJ01000014
Alphaproteobacteria
Neorhizobium sp. T25_27 [PVBJ]
118328
118244
-
Leu
CAA
[ENA]
¡û
>W1810346246
PVBK01000029
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
45563
45647
+
Leu
CAA
[ENA]
¡û
>W1810346285
PVBL01000016
Alphaproteobacteria
Neorhizobium sp. T6_25 [PVBL]
109656
109572
-
Leu
CAA
[ENA]
¡û
>W1810346319
PVBM01000011
Alphaproteobacteria
Neorhizobium huautlense DSM 21817 [PVBM]
47037
47121
+
Leu
CAA
[ENA]
¡û
>W1810346381
PVBN01000012
Alphaproteobacteria
Neorhizobium alkalisoli DSM 21826 [PVBN]
51262
51346
+
Leu
CAA
[ENA]
¡û
>W1810659813
QJKM01000027
Alphaproteobacteria
Rhizobium terrae NAU-18 [QJKM]
19863
19947
+
Leu
CAA
[ENA]
¡û
>W1810670707
QJRY01000003
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
65824
65740
-
Leu
CAA
[ENA]
¡û
>C151098047
FO082820
Alphaproteobacteria
Pseudorhizobium banfieldiae NT-26 [FO082820]
3326898
3326982
+
Leu
CAA
[Ensembl]
¡û
>C151101674
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
396195
396111
-
Leu
CAA
[Ensembl]
¡û
>C151101721
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
410927
410843
-
Leu
CAA
[Ensembl]
¡û
>W1510052894
CCRG01000032
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRG]
45636
45720
+
Leu
CAA
[ENA]
¡û
>W1510052908
CCRH01000002
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRH]
45718
45802
+
Leu
CAA
[ENA]
¡û
>W1510052975
CCRI01000015
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRI]
96017
95933
-
Leu
CAA
[ENA]
¡û
>W1510052990
CCRJ01000002
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
191880
191964
+
Leu
CAA
[ENA]
¡û
>W1510053066
CCRK01000012
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
134916
134832
-
Leu
CAA
[ENA]
¡û
>W1510053106
CCRL01000011
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
158045
157961
-
Leu
CAA
[ENA]
¡û
>W1510053155
CCRM01000036
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRM]
5902
5818
-
Leu
CAA
[ENA]
¡û
>W1510053176
CCRN01000005
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRN]
375350
375266
-
Leu
CAA
[ENA]
¡û
>W1511318832
JPYQ01000055
Alphaproteobacteria
Rhizobium sp. YS-1r [JPYQ]
524315
524231
-
Leu
CAA
[ENA]
¡û
>W121086637
AKKC01000538
Alphaproteobacteria
Rhizobium sp. CF080 [AKKC]
2453
2537
+
Leu
CAA
[ENA]
¡û
>W1610616452
LGLV01000027
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
8003
8087
+
Leu
CAA
[ENA]
¡û
>W1610722936
LMCZ01000042
Alphaproteobacteria
Rhizobium sp. Root1204 [LMCZ]
60104
60020
-
Leu
CAA
[ENA]
¡û
>W1610723876
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
449957
450041
+
Leu
CAA
[ENA]
¡û
>W1610725598
LMEY01000027
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
60077
59993
-
Leu
CAA
[ENA]
¡û
>W1610725722
LMFB01000019
Alphaproteobacteria
Rhizobium sp. Root483D2 [LMFB]
502155
502239
+
Leu
CAA
[ENA]
¡û
>W1610727149
LMGD01000022
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
27732
27648
-
Leu
CAA
[ENA]
¡û
>W1610729733
LMIF01000029
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
66890
66806
-
Leu
CAA
[ENA]
¡û
>W1610730927
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
449887
449971
+
Leu
CAA
[ENA]
¡û
>W1610739927
LMQF01000026
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
66455
66371
-
Leu
CAA
[ENA]
¡û
>W1610739965
LMQG01000019
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
66562
66478
-
Leu
CAA
[ENA]
¡û
>W1610741152
LMRG01000011
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
66700
66616
-
Leu
CAA
[ENA]
¡û
>W1710525508
FNJP01000002
Alphaproteobacteria
Phyllobacterium sp. YR620 [FNJP]
928381
928465
+
Leu
CAA
[ENA]
¡û
>W1710556800
FOKM01000005
Alphaproteobacteria
Rhizobium sp. NFR07 [FOKM]
34264
34348
+
Leu
CAA
[ENA]
¡û
>W1710596589
FTMR01000006
Alphaproteobacteria
Rhizobium sp. RU35A [FTMR]
28535
28451
-
Leu
CAA
[ENA]
¡û
>W1710607625
FXAF01000001
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
47805
47889
+
Leu
CAA
[ENA]
¡û
>W1710737698
LGLV01000027
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
8003
8087
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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