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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118224 (64 seq.)
>WENV180003420
FLNZ01004338
[FLNZ] bioreactor metagenome; Moose rumen
283
200
-
Leu
TAG
[ENA]
¡û
>WENV180003526
FLNZ01005242
[FLNZ] bioreactor metagenome; Moose rumen
109
26
-
Leu
TAG
[ENA]
¡û
>WENV180229203
OBCH01003729
[OBCH] human gut metagenome; human gut
278
364
+
Leu
TAG
[ENA]
¡û
>WENV180230448
OBCL01016381
[OBCL] human gut metagenome; human gut
720
806
+
Leu
TAG
[ENA]
¡û
>WENV180282224
OBIB01010209
[OBIB] human gut metagenome; human gut
201
119
-
Leu
TAG
[ENA]
¡û
>WENV180286679
OBII01008661
[OBII] human gut metagenome; feces
1070
988
-
Leu
TAG
[ENA]
¡û
>WENV180339013
OBLI01001790
[OBLI] pig gut metagenome; faeces
18085
18171
+
Leu
TAG
[ENA]
¡û
>WENV180546701
OCIU01003649
[OCIU] human gut metagenome; human gut
7238
7320
+
Leu
TAG
[ENA]
¡û
>WENV180599336
OCPP01000564
[OCPP] human gut metagenome; faeces
6911
6993
+
Leu
TAG
[ENA]
¡û
>WENV180642910
OCRP01001392
[OCRP] human gut metagenome; human gut
11591
11677
+
Leu
TAG
[ENA]
¡û
>WENV180660621
OCVV010950895
[OCVV] gut metagenome; gut
3059
2977
-
Leu
TAG
[ENA]
¡û
>WENV180660622
OCVV010950895
[OCVV] gut metagenome; gut
3059
2977
-
Leu
TAG
[ENA]
¡û
>WENV180660819
OCVV010968339
[OCVV] gut metagenome; gut
124
206
+
Leu
TAG
[ENA]
¡û
>WENV180660820
OCVV010968339
[OCVV] gut metagenome; gut
124
206
+
Leu
TAG
[ENA]
¡û
>WENV180665157
OCVV011180200
[OCVV] gut metagenome; gut
1222
1304
+
Leu
TAG
[ENA]
¡û
>WENV180665158
OCVV011180200
[OCVV] gut metagenome; gut
1222
1304
+
Leu
TAG
[ENA]
¡û
>WENV180684067
OCVV012852214
[OCVV] gut metagenome; gut
738
656
-
Leu
TAG
[ENA]
¡û
>WENV180684068
OCVV012852214
[OCVV] gut metagenome; gut
738
656
-
Leu
TAG
[ENA]
¡û
>WENV181162073
OEIM01074456
[OEIM] human gut metagenome; human gut
105
23
-
Leu
TAG
[ENA]
¡û
>WENV181444777
OGDS01000041
[OGDS] metagenome; Human gut stool
64406
64324
-
Leu
TAG
[ENA]
¡û
>WENV181473056
OGFB01000016
[OGFB] metagenome; Human gut stool
127334
127416
+
Leu
TAG
[ENA]
¡û
>WENV181545927
OGIH01000904
[OGIH] metagenome; Human gut stool
7407
7489
+
Leu
TAG
[ENA]
¡û
>WENV181585673
OGKF01027634
[OGKF] metagenome; Human gut stool
437
519
+
Leu
TAG
[ENA]
¡û
>WENV181615978
OGLY01000025
[OGLY] metagenome; Human gut stool
96956
97038
+
Leu
TAG
[ENA]
¡û
>WENV181631709
OGMT01000027
[OGMT] metagenome; Human gut stool
2605
2523
-
Leu
TAG
[ENA]
¡û
>WENV181669859
OGOM01000304
[OGOM] human gut metagenome; faeces
45811
45893
+
Leu
TAG
[ENA]
¡û
>WENV181745344
OGQM01021976
[OGQM] human gut metagenome; faeces
872
790
-
Leu
TAG
[ENA]
¡û
>WENV181873291
OGWZ01061050
[OGWZ] human gut metagenome; faeces
197
115
-
Leu
TAG
[ENA]
¡û
>WENV181997900
OHAU01008129
[OHAU] human gut metagenome; faeces
1445
1363
-
Leu
TAG
[ENA]
¡û
>WENV182008517
OHBJ01001328
[OHBJ] human gut metagenome; faeces
8598
8516
-
Leu
TAG
[ENA]
¡û
>WENV182532484
OIXA01002344
[OIXA] human gut metagenome; faeces
7222
7306
+
Leu
TAG
[ENA]
¡û
>WENV182741611
OJQN01000188
[OJQN] human gut metagenome; stool sample
2188
2106
-
Leu
TAG
[ENA]
¡û
>WENV182868741
OKRS01021081
[OKRS] human gut metagenome; faeces
448
366
-
Leu
TAG
[ENA]
¡û
>WENV182968932
OKXB01007777
[OKXB] human gut metagenome; human gut
519
601
+
Leu
TAG
[ENA]
¡û
>WENV183029609
OLFW01000807
[OLFW] human gut metagenome; faeces
14555
14473
-
Leu
TAG
[ENA]
¡û
>WENV183046030
OLGE01053992
[OLGE] human gut metagenome; faeces
914
996
+
Leu
TAG
[ENA]
¡û
>WENV183051390
OLGJ01000055
[OLGJ] human gut metagenome; faeces
23576
23494
-
Leu
TAG
[ENA]
¡û
>WENV183069336
OLIR01000026
[OLIR] metagenome; faeces
89162
89244
+
Leu
TAG
[ENA]
¡û
>WENV183258102
OLRN01000525
[OLRN] human gut metagenome; faeces
7562
7480
-
Leu
TAG
[ENA]
¡û
>WENV183333411
OLWE01000529
[OLWE] human gut metagenome; feces
7523
7605
+
Leu
TAG
[ENA]
¡û
>WENV183387715
OLYY01001667
[OLYY] human gut metagenome; feces
967
1053
+
Leu
TAG
[ENA]
¡û
>WENV183418149
OMAY01000030
[OMAY] human gut metagenome; feces
77420
77502
+
Leu
TAG
[ENA]
¡û
>WENV183426430
OMBL01016153
[OMBL] human gut metagenome; feces
529
443
-
Leu
TAG
[ENA]
¡û
>WENV183532216
OOAD01000014
[OOAD] human gut metagenome; human gut
62940
62858
-
Leu
TAG
[ENA]
¡û
>WENV183552185
OOBJ01001311
[OOBJ] human gut metagenome; human gut
15269
15351
+
Leu
TAG
[ENA]
¡û
>WENV183641182
OQVL01023280
[OQVL] human gut metagenome; human gut
1505
1419
-
Leu
TAG
[ENA]
¡û
>WENV183647804
OQVS01003001
[OQVS] human gut metagenome; human gut
7579
7665
+
Leu
TAG
[ENA]
¡û
>WENV183649733
OQVT01004610
[OQVT] human gut metagenome; human gut
7614
7700
+
Leu
TAG
[ENA]
¡û
>WENV170027912
CDTY01050052
[CDTY] gut metagenome; human stools
32444
32528
+
Leu
TAG
[ENA]
¡û
>WENV170036093
CDYN01004489
[CDYN] gut metagenome; human stools
5418
5500
+
Leu
TAG
[ENA]
¡û
>WENV170046587
CDYY01043186
[CDYY] gut metagenome; human stools
4978
5060
+
Leu
TAG
[ENA]
¡û
>WENV170056154
CDZF01038727
[CDZF] gut metagenome; human stools
64435
64353
-
Leu
TAG
[ENA]
¡û
>WENV170087637
CEAD01013254
[CEAD] gut metagenome; human stools
253
337
+
Leu
TAG
[ENA]
¡û
>WENV170778271
LXOW01378749
[LXOW] bovine gut metagenome; Cow rumen
300
218
-
Leu
TAG
[ENA]
¡û
>WENV170778317
LXOW01386750
[LXOW] bovine gut metagenome; Cow rumen
3069
3151
+
Leu
TAG
[ENA]
¡û
>WENV170778971
LXOW01461725
[LXOW] bovine gut metagenome; Cow rumen
2199
2115
-
Leu
TAG
[ENA]
¡û
>W141563758
JIAF01000004
Bacteroidota
Prevotella sp. HUN102 [JIAF]
235750
235832
+
Leu
TAG
[ENA]
¡û
>W2010432158
FZQZ01000011
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
63728
63646
-
Leu
TAG
[ENA]
¡û
>C231305965
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
3315964
3315882
-
Leu
TAG
-
¡û
>C231306002
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
950313
950395
+
Leu
TAG
-
¡û
>C231306136
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
864404
864322
-
Leu
TAG
-
¡û
>C231306238
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
730439
730357
-
Leu
TAG
-
¡û
>C231306290
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
730448
730366
-
Leu
TAG
-
¡û
>WENV078607
AAQK01003866
Gut microbiome of Human (healthy human stool sample 7)
317
403
+
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK