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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118510 (129 seq.)
>W1711027062
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75799
75715
-
Leu
TAG
[ENA]
¡û
>W1711174319
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59142
59226
+
Leu
TAG
[ENA]
¡û
>W1711174322
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59542
59626
+
Leu
TAG
[ENA]
¡û
>W1711621605
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719155
719239
+
Leu
TAG
[ENA]
¡û
>W1711621609
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719642
719726
+
Leu
TAG
[ENA]
¡û
>W1711934393
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179782
179698
-
Leu
TAG
[ENA]
¡û
>W1711934397
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179317
179233
-
Leu
TAG
[ENA]
¡û
>W1712080447
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
62171
62087
-
Leu
TAG
[ENA]
¡û
>W1712080450
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61830
61746
-
Leu
TAG
[ENA]
¡û
>WENV013075
AACY020358049
Marine microbial communities from Global Ocean Sampling (GOS)
98
184
+
Leu
TAG
[ENA]
>C020671
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818328
3818244
-
Leu
TAG
[Ensembl]
¡û
>C020675
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3817855
3817771
-
Leu
TAG
[Ensembl]
¡û
>C020923
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
940259
940343
+
Leu
TAG
[Ensembl]
¡û
>C021950
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843884
843968
+
Leu
TAG
[Ensembl]
¡û
>C022218
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184307
1184391
+
Leu
TAG
[Ensembl]
¡û
>C022222
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184772
1184856
+
Leu
TAG
[Ensembl]
¡û
>C022320
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1176729
1176813
+
Leu
TAG
[Ensembl]
¡û
>C022324
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1177194
1177278
+
Leu
TAG
[Ensembl]
¡û
>C022416
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239076
1239160
+
Leu
TAG
[Ensembl]
¡û
>C022420
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239541
1239625
+
Leu
TAG
[Ensembl]
¡û
>C022519
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1197472
1197556
+
Leu
TAG
[Ensembl]
¡û
>C022523
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1197938
1198022
+
Leu
TAG
[Ensembl]
¡û
>C022920
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229671
1229755
+
Leu
TAG
[Ensembl]
¡û
>C022924
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1230132
1230216
+
Leu
TAG
[Ensembl]
¡û
>C023283
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3313042
3312958
-
Leu
TAG
[Ensembl]
¡û
>C023287
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3312576
3312492
-
Leu
TAG
[Ensembl]
¡û
>w026317
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17760
17846
+
Leu
TAG
[ENA]
¡û
>w026313
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17287
17373
+
Leu
TAG
[ENA]
¡û
>w024927
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
887
973
+
Leu
TAG
[ENA]
¡û
>w024923
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
400
486
+
Leu
TAG
[ENA]
¡û
>w022924
AAWY01000064
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
14176
14090
-
Leu
TAG
[ENA]
¡û
>w022920
AAWY01000064
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
14642
14556
-
Leu
TAG
[ENA]
¡û
>w018660
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13084
12998
-
Leu
TAG
[ENA]
¡û
>w018656
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13557
13471
-
Leu
TAG
[ENA]
¡û
>w007657
AAIU01000006
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
35233
35147
-
Leu
TAG
[ENA]
¡û
>W141171250
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
28131
28047
-
Leu
TAG
[ENA]
¡û
>W141171254
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
27666
27582
-
Leu
TAG
[ENA]
¡û
>C08008656
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3931100
3931019
-
Leu
TAG
[Ensembl]
¡û
>C08008660
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3930613
3930532
-
Leu
TAG
[Ensembl]
¡û
>W141227901
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
62357
62441
+
Leu
TAG
[ENA]
¡û
>W141227905
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
62822
62906
+
Leu
TAG
[ENA]
¡û
>C08008760
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4054018
4053937
-
Leu
TAG
[Ensembl]
¡û
>C08008764
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053545
4053464
-
Leu
TAG
[Ensembl]
¡û
>W141277726
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
55770
55686
-
Leu
TAG
[ENA]
¡û
>W141277729
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
55396
55312
-
Leu
TAG
[ENA]
¡û
>WENV170022234
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2198
2282
+
Leu
TAG
[ENA]
¢þ
>WENV170022238
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2693
2777
+
Leu
TAG
[ENA]
¢þ
>WENV021004
AACY020561423
Marine microbial communities from Global Ocean Sampling (GOS)
266
352
+
Leu
TAG
[ENA]
>C181016848
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4420821
4420737
-
Leu
TAG
-
¡û
>C181057581
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2349441
2349357
-
Leu
TAG
-
¡û
>C181057585
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2348980
2348896
-
Leu
TAG
-
¡û
>C181062986
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3590558
3590474
-
Leu
TAG
-
¡û
>C181062990
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3590093
3590009
-
Leu
TAG
-
¡û
>C181075005
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108840
3108924
+
Leu
TAG
-
¡û
>C181075009
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109312
3109396
+
Leu
TAG
-
¡û
>C181164490
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033113
3033197
+
Leu
TAG
-
¡û
>C181164494
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033599
3033683
+
Leu
TAG
-
¡û
>C181165408
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3744390
3744474
+
Leu
TAG
-
¡û
>C181165412
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3744856
3744940
+
Leu
TAG
-
¡û
>C181167922
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648816
3648732
-
Leu
TAG
-
¡û
>C181167926
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648359
3648275
-
Leu
TAG
-
¡û
>W141520035
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
52676
52760
+
Leu
TAG
[ENA]
¡û
>W141520039
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53136
53220
+
Leu
TAG
[ENA]
¡û
>C191117233
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090634
4090550
-
Leu
TAG
-
¡û
>C191173247
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224273
1224189
-
Leu
TAG
-
¡û
>C191185836
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907770
907854
+
Leu
TAG
-
¡û
>C191187082
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3465206
3465122
-
Leu
TAG
-
¡û
>C191205218
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242451
3242535
+
Leu
TAG
-
¡û
>C191205222
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242916
3243000
+
Leu
TAG
-
¡û
>C191206465
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752694
3752610
-
Leu
TAG
-
¡û
>C191206469
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752221
3752137
-
Leu
TAG
-
¡û
>W09102913
AAIO01000137
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
330
414
+
Leu
TAG
[ENA]
¡û
>W09103096
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
209787
209703
-
Leu
TAG
[ENA]
¡û
>W09104087
AALH01000080
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
328
412
+
Leu
TAG
[ENA]
¡û
>W09104286
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
4202
4286
+
Leu
TAG
[ENA]
¡û
>W09104290
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
4668
4752
+
Leu
TAG
[ENA]
¡û
>W09104636
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
118
202
+
Leu
TAG
[ENA]
¡û
>W09104640
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
583
667
+
Leu
TAG
[ENA]
¡û
>C09109142
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1306807
1306891
+
Leu
TAG
[Ensembl]
¡û
>C09109146
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1307280
1307364
+
Leu
TAG
[Ensembl]
¡û
>W1910913780
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
38164
38080
-
Leu
TAG
[ENA]
¡û
>W1910913784
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
37699
37615
-
Leu
TAG
[ENA]
¡û
>W1810073430
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
260079
259995
-
Leu
TAG
[ENA]
¡û
>W1810155313
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
127
43
-
Leu
TAG
[ENA]
¡û
>W1810157821
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27941
28025
+
Leu
TAG
[ENA]
¡û
>W1810157862
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4225278
4225362
+
Leu
TAG
[ENA]
¡û
>W1810423000
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2465402
2465318
-
Leu
TAG
[ENA]
¡û
>W1810423004
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2464928
2464844
-
Leu
TAG
[ENA]
¡û
>W1810587772
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4374
4290
-
Leu
TAG
[ENA]
¡û
>W1810721530
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48476
48560
+
Leu
TAG
[ENA]
¡û
>W1810721534
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48948
49032
+
Leu
TAG
[ENA]
¡û
>W10119024
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303961
303877
-
Leu
TAG
[ENA]
¡û
>W10119028
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303488
303404
-
Leu
TAG
[ENA]
¡û
>W10126049
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508563
508479
-
Leu
TAG
[ENA]
¡û
>W10126053
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508077
507993
-
Leu
TAG
[ENA]
¡û
>W10126353
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303175
303259
+
Leu
TAG
[ENA]
¡û
>W10126357
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303661
303745
+
Leu
TAG
[ENA]
¡û
>C11119375
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319254
1319338
+
Leu
TAG
[Ensembl]
¡û
>C11119379
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319740
1319824
+
Leu
TAG
[Ensembl]
¡û
>C11119517
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912760
3912676
-
Leu
TAG
[Ensembl]
¡û
>C11119521
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912287
3912203
-
Leu
TAG
[Ensembl]
¡û
>C11119615
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001982
4001898
-
Leu
TAG
[Ensembl]
¡û
>C11119619
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001509
4001425
-
Leu
TAG
[Ensembl]
¡û
>W1511403529
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1090803
1090887
+
Leu
TAG
[ENA]
¡û
>C11121552
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3392020
3391936
-
Leu
TAG
[Ensembl]
¡û
>C11121556
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3391554
3391470
-
Leu
TAG
[Ensembl]
¡û
>W11125196
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303961
303877
-
Leu
TAG
[ENA]
¡û
>W11125200
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303488
303404
-
Leu
TAG
[ENA]
¡û
>W11133310
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508563
508479
-
Leu
TAG
[ENA]
¡û
>W11133314
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508077
507993
-
Leu
TAG
[ENA]
¡û
>W11133614
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303175
303259
+
Leu
TAG
[ENA]
¡û
>W11133618
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303661
303745
+
Leu
TAG
[ENA]
¡û
>W11169880
AFOZ01000014
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
378524
378608
+
Leu
TAG
[ENA]
¡û
>W11178473
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164496
164412
-
Leu
TAG
[ENA]
¡û
>W121103353
AKZL01000154
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
4482
4398
-
Leu
TAG
[ENA]
¡û
>W1610072056
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23742
23826
+
Leu
TAG
[ENA]
¡û
>W1610072060
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24208
24292
+
Leu
TAG
[ENA]
¡û
>W1610617878
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41315
41399
+
Leu
TAG
[ENA]
¡û
>W1610875174
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75799
75715
-
Leu
TAG
[ENA]
¡û
>W1610982632
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59142
59226
+
Leu
TAG
[ENA]
¡û
>W1610982635
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59542
59626
+
Leu
TAG
[ENA]
¡û
>W1710069258
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23742
23826
+
Leu
TAG
[ENA]
¡û
>W1710069262
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24208
24292
+
Leu
TAG
[ENA]
¡û
>W1710597903
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
148115
148199
+
Leu
TAG
[ENA]
¡û
>W1710597907
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
148577
148661
+
Leu
TAG
[ENA]
¡û
>W1710692493
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
98054
98138
+
Leu
TAG
[ENA]
¡û
>W1710706692
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384742
384658
-
Leu
TAG
[ENA]
¡û
>W1710706696
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384281
384197
-
Leu
TAG
[ENA]
¡û
>W1710744053
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41315
41399
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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