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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118628 (36 seq.)
>C025668
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
510977
510891
-
Leu
TAG
-
¡û
>C025771
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
424531
424617
+
Leu
TAG
[Ensembl]
¡û
>W141070750
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
54341
54427
+
Leu
TAG
[ENA]
¡û
>W141082658
AUNF01000047
Thermotogota
Thermotoga sp. A7A [AUNF]
27656
27742
+
Leu
TAG
[ENA]
¡û
>WENV181409056
OGCH01041006
[OGCH] hot springs metagenome; hot springs
178
92
-
Leu
TAG
[ENA]
¢þ
>C08010882
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
442603
442689
+
Leu
TAG
[Ensembl]
¡û
>WENV170675923
LDZQ01001394
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2431
2517
+
Leu
TAG
[ENA]
¢þ
>WENV170676164
LDZR01001289
[LDZR] terrestrial metagenome; oil reservoir sample K2
8935
8849
-
Leu
TAG
[ENA]
¢þ
>WENV170676545
LDZS01001172
[LDZS] terrestrial metagenome; oil reservoir sample K3
1729
1815
+
Leu
TAG
[ENA]
¢þ
>W09106574
AAWB01000026
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
5527
5441
-
Leu
TAG
[ENA]
¡û
>W09107443
ABIJ01000013
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
5382
5296
-
Leu
TAG
[ENA]
¡û
>W09112234
ABXR01000024
Thermotogota
Marinitoga piezophila KA3 [ABXR]
21155
21241
+
Leu
TAG
[ENA]
¡û
>C141011513
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
434639
434725
+
Leu
TAG
-
¡û
>W1910635454
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
61534
61448
-
Leu
TAG
[ENA]
¡û
>W1910635509
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
279562
279476
-
Leu
TAG
[ENA]
¡û
>C09110628
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
177892
177978
+
Leu
TAG
[Ensembl]
¡û
>C151004304
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
433917
434003
+
Leu
TAG
[Ensembl]
¡û
>C151030618
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
455338
455424
+
Leu
TAG
[Ensembl]
¡û
>C151074628
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
510983
510897
-
Leu
TAG
[Ensembl]
¡û
>C151076982
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
510983
510897
-
Leu
TAG
[Ensembl]
¡û
>C151077028
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
510983
510897
-
Leu
TAG
[Ensembl]
¡û
>W10105838
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
86241
86155
-
Leu
TAG
[ENA]
¡û
>C10113517
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
265240
265154
-
Leu
TAG
[Ensembl]
¡û
>W11108158
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
86241
86155
-
Leu
TAG
[ENA]
¡û
>W11180778
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
822538
822624
+
Leu
TAG
[ENA]
¡û
>C131012518
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
510983
510897
-
Leu
TAG
-
¡û
>W1610540343
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
15183
15269
+
Leu
TAG
[ENA]
¡û
>W1610540399
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
276421
276507
+
Leu
TAG
[ENA]
¡û
>W1610540434
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
252750
252836
+
Leu
TAG
[ENA]
¡û
>W1610540479
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
86394
86308
-
Leu
TAG
[ENA]
¡û
>W1610612910
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8935
8849
-
Leu
TAG
[ENA]
¡û
>W1710643364
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
15183
15269
+
Leu
TAG
[ENA]
¡û
>W1710643420
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
276421
276507
+
Leu
TAG
[ENA]
¡û
>W1710643455
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
252750
252836
+
Leu
TAG
[ENA]
¡û
>W1710643500
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
86394
86308
-
Leu
TAG
[ENA]
¡û
>W1710734192
LGFG01000041
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
8935
8849
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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