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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.11874 (45 seq.)
>W1711092329
LTDX01000092
Bacillota
Lactobacillus acetotolerans [LTDX]
677
586
-
Ser
GCT
[ENA]
¡û
>W1711191015
LWSH01000030
Bacillota
Lactobacillus acidophilus [LWSH]
1413
1504
+
Ser
GCT
[ENA]
¡û
>W131252104
CBLP010000006
Bacillota
Lactobacillus acidophilus CIRM-BIA 442 [CBLP]
1255
1346
+
Ser
GCT
[ENA]
¡û
>W131252162
CBLQ010000022
Bacillota
Lactobacillus acidophilus CIP 76.13 [CBLQ]
584
675
+
Ser
GCT
[ENA]
¡û
>W131252202
CBLR010000006
Bacillota
Lactobacillus acidophilus CIRM-BIA 445 [CBLR]
77
168
+
Ser
GCT
[ENA]
¡û
>W131252298
CBLT010000002
Bacillota
Lactobacillus acidophilus DSM 20242 [CBLT]
1290
1381
+
Ser
GCT
[ENA]
¡û
>W1712041360
NFKZ01000061
Bacillota
Lactobacillus gallinarum [NFKZ]
291
382
+
Ser
GCT
[ENA]
¡û
>W1712042270
NFLP01000062
Bacillota
Lactobacillus gallinarum [NFLP]
291
382
+
Ser
GCT
[ENA]
¡û
>C011170
CP000033
Bacillota
Lactobacillus acidophilus NCFM [CP000033]
420178
420267
+
Ser
GCT
[Ensembl]
¡û
>W141195329
AYUA01000072
Bacillota
Lactobacillus acidophilus CFH [AYUA]
3640
3549
-
Ser
GCT
[ENA]
¡û
>W141195389
AYUB01000059
Bacillota
Lactobacillus acidophilus CFH [AYUB]
191
282
+
Ser
GCT
[ENA]
¡û
>W141255464
CBUH010000201
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
12693
12602
-
Ser
GCT
[ENA]
¡û
>WENV183151047
OLOP01023148
[OLOP] human gut metagenome; faeces
1374
1283
-
Ser
GCT
[ENA]
¢þ
>WENV183182845
OLPK01001697
[OLPK] human gut metagenome; faeces
1281
1372
+
Ser
GCT
[ENA]
¢þ
>WENV183606602
OODN01019822
[OODN] human gut metagenome; human gut
590
681
+
Ser
GCT
[ENA]
¢þ
>C181022951
CP017062
Bacillota
Lactobacillus acidophilus LA1 [CP017062]
420166
420257
+
Ser
GCT
-
¡û
>C181027682
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
674782
674691
-
Ser
GCT
-
¡û
>C181065333
CP022449
Bacillota
Lactobacillus acidophilus ATCC 53544 [CP022449]
734279
734370
+
Ser
GCT
-
¡û
>C181178875
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
359543
359634
+
Ser
GCT
-
¡û
>C191030190
CP025200
Bacillota
Lactobacillus acidophilus YT1 [CP025200]
441802
441893
+
Ser
GCT
-
¡û
>W09124272
ACHN01000061
Bacillota
Lactobacillus acidophilus ATCC 4796 [ACHN]
1290
1381
+
Ser
GCT
[ENA]
¡û
>W09127647
ACLD01000128
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
3994
3903
-
Ser
GCT
[ENA]
¡û
>W1910923229
NIGU01000011
Bacillota
Lactobacillus acidophilus LMG P-21904 [NIGU]
1326
1417
+
Ser
GCT
[ENA]
¡û
>W1911160236
NPNG01000019
Bacillota
Lactobacillus bombicola H70-3 [NPNG]
4198
4108
-
Ser
GCT
[ENA]
¡û
>W1911423134
NXEY01000013
Bacillota
Lactobacillus acidophilus P2 [NXEY]
1588
1679
+
Ser
GCT
[ENA]
¡û
>W1810473301
QAHJ01000141
Bacillota
Lactobacillus helveticus DS12_8 [QAHJ]
300
391
+
Ser
GCT
[ENA]
¡û
>W1810473527
QAHN01000014
Bacillota
Lactobacillus acidophilus DS9_1A [QAHN]
13620
13529
-
Ser
GCT
[ENA]
¡û
>W1810473587
QAHO01000014
Bacillota
Lactobacillus acidophilus DS8_1A [QAHO]
13620
13529
-
Ser
GCT
[ENA]
¡û
>W1810473707
QAHQ01000025
Bacillota
Lactobacillus acidophilus DS2_1A [QAHQ]
1417
1508
+
Ser
GCT
[ENA]
¡û
>W1810473766
QAHR01000017
Bacillota
Lactobacillus acidophilus DS13_1A [QAHR]
13570
13479
-
Ser
GCT
[ENA]
¡û
>W1810489135
QAZU01000101
Bacillota
Lactobacillus helveticus DS3_8 [QAZU]
1419
1510
+
Ser
GCT
[ENA]
¡û
>W1810489297
QAZX01000014
Bacillota
Lactobacillus acidophilus DS24_1 [QAZX]
13620
13529
-
Ser
GCT
[ENA]
¡û
>C11111928
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
453810
453901
+
Ser
GCT
[Ensembl]
¡û
>C11112082
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
456540
456631
+
Ser
GCT
[Ensembl]
¡û
>C11112881
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
434952
435043
+
Ser
GCT
[Ensembl]
¡û
>W1511505420
JXLG01000005
Bacillota
Lactobacillus apis Hma11 [JXLG]
1339
1430
+
Ser
GCT
[ENA]
¡û
>W1511580690
LARO01000034
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
11323
11232
-
Ser
GCT
[ENA]
¡û
>C161041473
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
448505
448596
+
Ser
GCT
-
¡û
>C161047009
CP012890
Bacillota
Lactobacillus gallinarum HFD4 [CP012890]
96919
96828
-
Ser
GCT
[Ensembl]
¡û
>W1610032839
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
1487
1578
+
Ser
GCT
[ENA]
¡û
>W1610045754
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
11127
11036
-
Ser
GCT
[ENA]
¡û
>C131015865
CP005926
Bacillota
Lactobacillus acidophilus La-14 [CP005926]
420175
420266
+
Ser
GCT
[Ensembl]
¡û
>W1610992618
LWSH01000030
Bacillota
Lactobacillus acidophilus [LWSH]
1413
1504
+
Ser
GCT
[ENA]
¡û
>W1710030170
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
1487
1578
+
Ser
GCT
[ENA]
¡û
>W1710042595
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
11127
11036
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK