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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119062 (39 seq.)
>W1711509532
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
6925548
6925464
-
Tyr
GTA
[ENA]
¡û
>W1711509585
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
7112543
7112459
-
Tyr
GTA
[ENA]
¡û
>W1711666542
MRCB01000007
Cyanobacteriota
Hydrococcus rivularis NIES-593 [MRCB]
52206
52122
-
Tyr
GTA
[ENA]
¡û
>W1711666765
MRCG01000010
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
58203
58284
+
Tyr
GTA
[ENA]
¡û
>C171064214
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
8179371
8179287
-
Tyr
GTA
-
¡û
>C171127268
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
4797865
4797946
+
Tyr
GTA
-
¡û
>W131035987
AJUB01000005
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
393054
393135
+
Tyr
GTA
[ENA]
¡û
>W141004289
AFXD01000016
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
17388
17470
+
Tyr
GTA
[ENA]
¡û
>W141240142
CAFN01000668
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
11181
11263
+
Tyr
GTA
[ENA]
¡û
>C08000546
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
5409912
5409993
+
Tyr
GTA
[Ensembl]
¡û
>W141242370
CAIH01000175
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
15287
15203
-
Tyr
GTA
[ENA]
¡û
>W141242538
CAIL01000261
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
63935
63851
-
Tyr
GTA
[ENA]
¡û
>WENV183748392
PPFU01034827
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1282
1363
+
Tyr
GTA
[ENA]
¢þ
>WENV170000902
AFSR01007413
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
106
22
-
Tyr
GTA
[ENA]
¢þ
>W09113174
ABYK01000055
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
11907
11989
+
Tyr
GTA
[ENA]
¡û
>W09134560
ACSK01001798
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
110
28
-
Tyr
GTA
[ENA]
¡û
>C181169673
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
5800473
5800555
+
Tyr
GTA
-
¡û
>C141007935
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1677284
1677365
+
Tyr
GTA
-
¡û
>W1911177055
NQLA01000067
Cyanobacteriota
Vulcanococcus limneticus LL [NQLA]
9703
9620
-
Tyr
GTA
[ENA]
¡û
>W1810185587
PKGD01000462
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
290
372
+
Tyr
GTA
[ENA]
¡û
>W1810267620
PQWO01000002
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
32502
32585
+
Tyr
GTA
[ENA]
¡û
>W1810514832
QBVL01000022
Cyanobacteriota
Prochlorococcus sp. AG-311-J23 [QBVL]
10499
10418
-
Tyr
GTA
[ENA]
¡û
>W1810514834
QBVL01000022
Cyanobacteriota
Prochlorococcus sp. AG-311-J23 [QBVL]
2148
2067
-
Tyr
GTA
[ENA]
¡û
>W1810521176
QCHN01000004
Cyanobacteriota
Prochlorococcus sp. AG-402-C09 [QCHN]
106219
106138
-
Tyr
GTA
[ENA]
¡û
>W1810521178
QCHN01000004
Cyanobacteriota
Prochlorococcus sp. AG-402-C09 [QCHN]
105157
105076
-
Tyr
GTA
[ENA]
¡û
>W1810522156
QCIT01000010
Cyanobacteriota
Prochlorococcus sp. AG-402-N09 [QCIT]
2418
2337
-
Tyr
GTA
[ENA]
¡û
>W1810673487
QJUE01000002
Cyanobacteriota
Prochlorococcus marinus XMU1408 [QJUE]
113270
113189
-
Tyr
GTA
[ENA]
¡û
>W10111330
ADDH01000028
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
14452
14534
+
Tyr
GTA
[ENA]
¡û
>WENV11101245
AFSR01007413
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
106
22
-
Tyr
GTA
[ENA]
¡û
>W11114273
ADDH01000028
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
14452
14534
+
Tyr
GTA
[ENA]
¡û
>W11143173
AEPQ01000236
Cyanobacteriota
Moorena producens 3L [AEPQ]
22468
22552
+
Tyr
GTA
[ENA]
¡û
>W1511582920
LATL02000302
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
8224
8140
-
Tyr
GTA
[ENA]
¡û
>W1511585686
LAYT01000350
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
10879
10961
+
Tyr
GTA
[ENA]
¡û
>W11160123
AFEJ01000203
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
6123
6204
+
Tyr
GTA
[ENA]
¡û
>C161049384
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
31825
31907
+
Tyr
GTA
-
¡û
>C161103155
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
6214063
6213981
-
Tyr
GTA
-
¡û
>C131004891
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
3911854
3911772
-
Tyr
GTA
[Ensembl]
¡û
>C131004359
CP003590
Cyanobacteriota
Pleurocapsa sp. PCC 7327 [CP003590]
3653022
3652938
-
Tyr
GTA
[Ensembl]
¡û
>W1710698126
LAZT01000076
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
7644
7563
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK